Browse Element(s) Details


OsAffx.16241.1.S1_at

Description tigr:9635.m01305
TID=OsAffx.16241.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1324010/11hypothetical protein
LOC_Os10g297001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13200NANA7+7568110..7570312hypothetical protein
LOC_Os07g13210OsAffx.19614.1.A1_at2/117+7570871..7571593Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein
LOC_Os07g13220NANA7+7573736..7574101hypothetical protein
LOC_Os07g13230NANA7+7576011..7576807Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein
LOC_Os07g13240OsAffx.16241.1.S1_at10/117+7593180..7593993hypothetical protein
LOC_Os07g13249NANA7+7596089..7596388NA
LOC_Os07g13260Os.35204.1.S1_at11/117+7602407..7604002Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16241.1.S1_at--194--4051NONE
CGATGGCGAGCGATCGGGCCAAACC
NONE
OsAffx.16241.1.S1_at--1098--7531Chr07:7593550..7593574 (25 bp)
GGGCCAAACCGAGACAATTCTTCTT
LOC_Os07g13240
OsAffx.16241.1.S1_at--463--3152Chr11:18171002..18171026 (25 bp)
AATTCTTCTTATGTTTCCGCTTGCA
NONE
OsAffx.16241.1.S1_at--1006--6832Chr11:18171014..18171038 (25 bp)
GTTTCCGCTTGCACCATTAAATATG
NONE
OsAffx.16241.1.S1_at--457--8831Chr07:7593600..7593624 (25 bp)
TGATTTTACTATGCCATCCGAGACT
LOC_Os07g13240
OsAffx.16241.1.S1_at--738--2351Chr07:7593631..7593655 (25 bp)
AAAGCTTCTAATGTTGCACCAGAGA
LOC_Os07g13240
OsAffx.16241.1.S1_at--1018--4472Chr07:7593693..7593717 (25 bp)
GCCGAGGACGGCTTTGTTTCAAGGA
LOC_Os07g13240
OsAffx.16241.1.S1_at--1078--5873Chr10:15114471..15114495 (25 bp)
GAGCCCATGACTCATCAAGATGTTC
NONE
OsAffx.16241.1.S1_at--1037--6953Chr10:15114528..15114552 (25 bp)
GTAGCTGGTAATTCTCTAATATCAT
LOC_Os10g29700
OsAffx.16241.1.S1_at--1040--8052Chr08:17429967..17429991 (25 bp)
GGAGAAATTTACTAGCGCTGGTCTA
NONE
OsAffx.16241.1.S1_at--945--1632Chr08:17429980..17430004 (25 bp)
AGCGCTGGTCTATCATCAAATATAT
NONE
Target Sequence 
CGATGGCGAGCGATCGGGCCAAACCGAGACAATTCTTCTTATGTTTCCGCTTGCACCATTAAATATGATTTTACTATGCC
ATCCGAGACTACAATCAAAGCTTCTAATGTTGCACCAGAGAGTGAGGCCAAGGTAGAAGATGTTAAATATAAGTCAAAGC
CGAGGACGGCTTTGTTTCAAGGAAGGGAGGATGATGAGCCCATGACTCATCAAGATGTTCATGGAGACATGACTAGCGAT
AATTCAATTATTGTAGCTGGTAATTCTCTAATATCATCTGGTTTTCAATTTAAAGCTATTTATTTTGATGAGAAATATGG
CAAAAATATGGAGAAATTTACTAGCGCTGGTCTATCATCAAATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis