Browse Element(s) Details


Os.35204.1.S1_at

Description gb:AK068542.1
DB_XREF= gi:32978559
TID=Os.35204.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) DNA-binding protein Dof3-like protein (P0407H12.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155H18, full insert sequence.
FL= gb:AK068542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1326011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13240OsAffx.16241.1.S1_at10/117+7593180..7593993hypothetical protein
LOC_Os07g13249NANA7+7596089..7596388NA
LOC_Os07g13260Os.35204.1.S1_at11/117+7602407..7604002Dof domain, zinc finger family protein, expressed
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35204.1.S1_at--182--5831Chr07:7602893..7602917 (25 bp)
GACCTGCCGGCGTTTGACTTGTCAA
LOC_Os07g13260
Os.35204.1.S1_at--414--2071Chr07:7602877..7602901 (25 bp)
ACTTGTCAACGTCTGGAAATATACT
LOC_Os07g13260
Os.35204.1.S1_at--446--5591Chr07:7602862..7602886 (25 bp)
GAAATATACTGTGATGACTCAAGTC
LOC_Os07g13260
Os.35204.1.S1_at--378--271Chr07:7602734..7602758 (25 bp)
ATATGTTGTGTGTATCATGCATGCA
LOC_Os07g13260
Os.35204.1.S1_at--825--4991Chr07:7602678..7602702 (25 bp)
GCATGATCTGATCAGGGCCTAGAAG
LOC_Os07g13260
Os.35204.1.S1_at--1092--7731Chr07:7602607..7602631 (25 bp)
GGTGTGACTAATCTGTTTCTTGTTC
LOC_Os07g13260
Os.35204.1.S1_at--740--6731Chr07:7602586..7602610 (25 bp)
GTTCTTGCATATGCATGCCTAGCTT
LOC_Os07g13260
Os.35204.1.S1_at--442--571Chr07:7602572..7602596 (25 bp)
ATGCCTAGCTTGGTAGATCAAGTCA
LOC_Os07g13260
Os.35204.1.S1_at--867--6451Chr07:7602557..7602581 (25 bp)
GATCAAGTCATGAAGCTATAGCTAG
LOC_Os07g13260
Os.35204.1.S1_at--1052--5311Chr07:7602490..7602514 (25 bp)
GAAGTCATCATGAAGCTAGCTAGGT
LOC_Os07g13260
Os.35204.1.S1_at--613--7471Chr07:7602456..7602480 (25 bp)
GTGTGTTAGTGTTAAGCAAAGCTCT
LOC_Os07g13260
Target Sequence 
GACCTGCCGGCGTTTGACTTGTCAACGTCTGGAAATATACTGTGATGACTCAAGTCATGAGGCATATGCAGAATGGGTCA
ATGCATGGATGGTGCATGGCTTCATGGGGAAAAGAAGAAGAAAAATCAATCTAGAATCCTAGAACTAGAAGAGTGTTATA
TATGTTGTGTGTATCATGCATGCATGGAACCAAACTAGGTAAGTAATTTAATTTTGCATGATCTGATCAGGGCCTAGAAG
AACTATATTACTAGCTGATATGAATCTATAATTAGTTAGTCATTATGGTGTGACTAATCTGTTTCTTGTTCTTGCATATG
CATGCCTAGCTTGGTAGATCAAGTCATGAAGCTATAGCTAGGTTATAGCTGTGTGTTAGTATTAAGTAAGGTCGAGAAAT
ATTGAAGTCATCATGAAGCTAGCTAGGTTATATAGCTGTGTGTTAGTGTTAAGCAAAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis