Browse Element(s) Details


Os.10804.1.S1_at

Description gb:AK071087.1
DB_XREF= gi:32981110
TID=Os.10804.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU067950(C11314),D47377(S12737),D28177(C0105), AU067951(C11314),C97909(C0105),AU091725(S12737)~similar to Arabidopsis thaliana chromosome 2, At2g06530~unknown protein (P0407H12.41), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078G13, full insert sequence.
FL= gb:AK071087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1327011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13249NANA7+7596089..7596388NA
LOC_Os07g13260Os.35204.1.S1_at11/117+7602407..7604002Dof domain, zinc finger family protein, expressed
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein
LOC_Os07g13290OsAffx.5313.1.S1_at3/117+7629167..7629699hypothetical protein
LOC_Os07g13300NANA7+7630626..7633409RNA recognition motif family protein, expressed
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10804.1.S1_at--594--8071Chr07:7624008..7624032 (25 bp)
GGAGCTTGTGAATCAAGTCCTTGAT
LOC_Os07g13270
Os.10804.1.S1_at--905--3191Chr07:7624620..7624640 (21 bp)
CAAGAGCTTGTAAAGGCCCCTTCGG
LOC_Os07g13270
Os.10804.1.S1_at--748--2311Chr07:7624669..7624693 (25 bp)
AAAGGTTGCGCAGGCTGAATCTGCT
LOC_Os07g13270
Os.10804.1.S1_at--210--1911Chr07:7624707..7624731 (25 bp)
ACGGTGGAATCGACGCGGATTTGCA
LOC_Os07g13270
Os.10804.1.S1_at--181--4071Chr07:7624734..7624758 (25 bp)
CGAGGCTGGACAATCTGAGGAGAAT
LOC_Os07g13270
Os.10804.1.S1_at--884--1451Chr07:7624754..7624778 (25 bp)
AGAATGTAGATTTCCGACCGGTGCT
LOC_Os07g13270
Os.10804.1.S1_at--864--1771Chr07:7624770..7624794 (25 bp)
ACCGGTGCTGTGCTGCACTAACTAA
LOC_Os07g13270
Os.10804.1.S1_at--819--9191Chr07:7624809..7624833 (25 bp)
TGCCTTGTAGCACCATATCTTGTGA
LOC_Os07g13270
Os.10804.1.S1_at--1086--2991Chr07:7624918..7624942 (25 bp)
AATGATCGATGAGCAACCTCTTTGC
LOC_Os07g13270
Os.10804.1.S1_at--835--2631Chr07:7624932..7624956 (25 bp)
AACCTCTTTGCTCCGATGTGTCATT
LOC_Os07g13270
Os.10804.1.S1_at--511--9291Chr07:7624943..7624967 (25 bp)
TCCGATGTGTCATTCTTCTTACAGA
LOC_Os07g13270
Target Sequence 
GGAGCTTGTGAATCAAGTCCTTGATGAAATTGGCATTGATATTAACCAAGAGCTTGTAAAGGCCCCTTCGGCTGCCGTCG
CTCAGCCCGCAGCAGCAGGAAAGGTTGCGCAGGCTGAATCTGCTGGTGGGAATGGTGACGGTGGAATCGACGCGGATTTG
CAGGCGAGGCTGGACAATCTGAGGAGAATGTAGATTTCCGACCGGTGCTGTGCTGCACTAACTAAAAAAAGAGTGCTAGT
GCCTTGTAGCACCATATCTTGTGAATATGTATTTTCTACTAAAAGATTTGCAAGTGTACTTAGAGATTTGGAAATACATA
CTCGATATGTGGTATACTTTATACTAATAATGATCGATGAGCAACCTCTTTGCTCCGATGTGTCATTCTTCTTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis