Browse Element(s) Details


OsAffx.22422.1.S1_at

Description tigr:9635.m01315
TID=OsAffx.22422.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1333011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein
LOC_Os07g13290OsAffx.5313.1.S1_at3/117+7629167..7629699hypothetical protein
LOC_Os07g13300NANA7+7630626..7633409RNA recognition motif family protein, expressed
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified
LOC_Os07g13350OsAffx.32101.3.S1_x_at11/117+7659453..7662678hypothetical protein
LOC_Os07g13360OsAffx.4155.1.S1_at1/117+7665062..7665406hypothetical protein
LOC_Os07g13370Os.44296.1.S1_at11/117+7666690..7667091expressed protein
LOC_Os07g13380OsAffx.5316.1.S1_at11/117+7668345..7668584hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22422.1.S1_at--817--4171Chr07:7644260..7644284 (25 bp)
CCCATCATCACCTTTTTGCTAAAAC
LOC_Os07g13330
OsAffx.22422.1.S1_at--1055--10071Chr07:7644246..7644270 (25 bp)
TTTGCTAAAACCGTGGAACTGCCAA
LOC_Os07g13330
OsAffx.22422.1.S1_at--286--5451Chr07:7644231..7644255 (25 bp)
GAACTGCCAAGGTCCTTTAGGTGGG
LOC_Os07g13330
OsAffx.22422.1.S1_at--1009--7371Chr07:7644206..7644230 (25 bp)
GTGACCAGATCAGGCCACCATTAGC
LOC_Os07g13330
OsAffx.22422.1.S1_at--659--411Chr07:7644198..7644222 (25 bp)
ATCAGGCCACCATTAGCTCTAGGGT
LOC_Os07g13330
OsAffx.22422.1.S1_at--205--151Chr07:7644187..7644211 (25 bp)
ATTAGCTCTAGGGTGGCCAGATCTG
LOC_Os07g13330
OsAffx.22422.1.S1_at--212--7731Chr07:7644176..7644200 (25 bp)
GGTGGCCAGATCTGGTTGCATCTGA
LOC_Os07g13330
OsAffx.22422.1.S1_at--314--6411Chr07:7644168..7644192 (25 bp)
GATCTGGTTGCATCTGACTTCAGGG
LOC_Os07g13330
OsAffx.22422.1.S1_at--673--8951Chr07:7644154..7644178 (25 bp)
TGACTTCAGGGTAGCCCGATCTGGT
LOC_Os07g13330
OsAffx.22422.1.S1_at--59--1651Chr07:7644142..7644166 (25 bp)
AGCCCGATCTGGTGCCCCTAAGGTG
LOC_Os07g13330
OsAffx.22422.1.S1_at--723--2871Chr07:7644096..7644120 (25 bp)
AAGTGGGCGAAGACAACGCCGATGA
LOC_Os07g13330
Target Sequence 
CCCATCATCACCTTTTTGCTAAAACCGTGGAACTGCCAAGGTCCTTTAGGTGGGGTGACCAGATCAGGCCACCATTAGCT
CTAGGGTGGCCAGATCTGGTTGCATCTGACTTCAGGGTAGCCCGATCTGGTGCCCCTAAGGTGGCGGTGATCGACCCCGA
CGCCAAGTGGGCGAAGACAACGCCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis