Browse Element(s) Details


OsAffx.20869.1.S1_at

Description gb:XM_354416.1
DB_XREF= gi:35191180
TID=OsAffx.20869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g578301/11hypothetical protein
LOC_Os07g133191/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20869.1.S1_at--427--9671NONE
TCACCACCCACAAATTGCTGACTGG
NONE
OsAffx.20869.1.S1_at--252--7691Chr08:16754199..16754223 (25 bp)
GGGTATTTCGTCCTGTTTGCATAAT
NONE
OsAffx.20869.1.S1_at--102--1472Chr08:16754233..16754257 (25 bp)
AGAATGTCCGGTTTTCGGATTCAAG
NONE
OsAffx.20869.1.S1_at--777--70764Chr12:11418..11501 (25 bp)
GTAATTTCGGTCGACCGCGATAGTT
NONE
OsAffx.20869.1.S1_at--700--6131Chr08:16758324..16758348 (25 bp)
GAGGGAGTATGCTAACTACTCTCGT
NONE
OsAffx.20869.1.S1_at--660--8671Chr08:16758333..16758357 (25 bp)
TGCTAACTACTCTCGTTTTGGTTTC
NONE
OsAffx.20869.1.S1_at--193--10252Chr08:16758365..16758388 (24 bp)
TTTGGTTTCATATTTCAAGACGGTG
NONE
OsAffx.20869.1.S1_at--934--10331Chr08:16758706..16758730 (25 bp)
TTTTTATCGGGACCGGGATGAACAG
NONE
OsAffx.20869.1.S1_at--135--2112Chr08:16758727..16758751 (25 bp)
ACAGGGTTACTGTTGGACCGGTCAG
NONE
OsAffx.20869.1.S1_at--698--8351Chr08:16758794..16758854 (25 bp)
GGCGGCGACAGACCGATAGCTTCTA
NONE
OsAffx.20869.1.S1_at--611--6491Chr08:16758844..16758868 (25 bp)
GATAGCTTCTAGACAGTCAGACCGG
NONE
Target Sequence 
TCACCACCCACAAATTGCTGACTGGACTGCCACGTAGACCAAAACCACCGTGGATTGGGTCGAGGGGGGTATTTCGTCCT
GTTTGCATAATTGGGGGTGAAGAATGTCCGGTTTTCGGATTCAAGGGGGTAATTTCGGTCGACCGCGATAGTTCGGGGGG
AGGGGGAAACAAGAAGTCAAAGTTGTGTTTTGTAGACCATGTCGCTGTCCAAAACGGCTTCCTTTATGAGTATGGAGGGA
GTATGCTAACTACTCTCGTTTTGGTTTCATATCGTTTTGGTTTCATATTTCAAGACGGTGATGAACAGGGTTACTGTTTT
TATCGGGACCGGGATGAACAGGGTTACTGTTGGACCGGTCAGACCGGCGGAACAACGGCGGTCAGACCGGCGACAGCAAC
AGGAGGCGGCGACAGACCGATAGCTTCTAGACAGTCAGACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis