Browse Element(s) Details


Os.8586.1.S1_at

Description gb:AK103914.1
DB_XREF= gi:32989123
TID=Os.8586.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G10, full insert sequence.
FL= gb:AK100700.1 gb:AK060551.1 gb:AK103914.1 gb:AK071881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5778011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57730OsAffx.3634.1.S1_at11/113+32841829..32842334Plastocyanin-like domain containing protein
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed
LOC_Os03g57770OsAffx.25747.1.S1_at11/113+32858482..32859169expressed protein
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8586.1.S1_at--680--8691Chr03:32868398..32868422 (25 bp)
TGTGCAGCGGCCGTCCATCGAGGAC
LOC_Os03g57780
Os.8586.1.S1_at--894--6431Chr03:32868518..32868542 (25 bp)
GATCACGAAATCCTCCAGATTCCAG
LOC_Os03g57780
Os.8586.1.S1_at--254--8891Chr03:32868769..32868793 (25 bp)
TGAGGATTCGTCAGCTCGTGGATCA
LOC_Os03g57780
Os.8586.1.S1_at--662--31Chr03:32868864..32868888 (25 bp)
ATTGATGGAACTGATCCTCCGGGTT
LOC_Os03g57780
Os.8586.1.S1_at--717--9071Chr03:32868890..32868914 (25 bp)
TGCTTCTGTCTTGATGCACACAACC
LOC_Os03g57780
Os.8586.1.S1_at--496--10671Chr03:32868922..32868946 (25 bp)
TTCCTGATCGTGTTTGCTCACTGAA
LOC_Os03g57780
Os.8586.1.S1_at--711--7431Chr03:32868931..32868955 (25 bp)
GTGTTTGCTCACTGAATCCTTTAAA
LOC_Os03g57780
Os.8586.1.S1_at--991--2251Chr03:32868953..32868977 (25 bp)
AAATCTCAGAAACGCCTTCATTTGT
LOC_Os03g57780
Os.8586.1.S1_at--1075--351Chr03:32869043..32869067 (25 bp)
ATAATGTTGTGCTGTGCAAGCCCCT
LOC_Os03g57780
Os.8586.1.S1_at--381--3231Chr03:32869059..32869083 (25 bp)
CAAGCCCCTGTATCGTTCTGTCAAT
LOC_Os03g57780
Os.8586.1.S1_at--1026--10031Chr03:32869097..32869121 (25 bp)
TAGTTTCTACTACCAACGGTCAGAG
LOC_Os03g57780
Target Sequence 
TGTGCAGCGGCCGTCCATCGAGGACGTCCTCTGGAACCTGCAGTTCGCTGCACAGGTGCAGGACGACTGGGAAGGAGATA
ACCGGAGCAGCGACGGTTCAATGGTGTCGTCGTCGTCCCGGATCACGAAATCCTCCAGATTCCAGAATGAGCAAACCAGG
TCTGGGCGGGAAAAAGAATGTGAGGATTCGTCAGCTCGTGGATCAGTGTGGCTGCAGGCTGCAACAGAAGATGGAAATTT
TGAGACAGGCAGGAGGCAAGCTGAAGATGAAAGATATTGATGGAACTGATCCTCCGGGTTGTGCTTCTGTCTTGATGCAC
ACAACCTTCCCCTTTCCTGATCGTGTTTGCTCACTGAATCCTTTAAATCTCAGAAACGCCTTCATTTGTTTTTTCTTCTT
TTCTTTCTTTTTTGTCTTTAGGCGTACAATAATATGTGCTTTTTAGGCGTACAAATAATGTTGTGCTGTGCAAGCCCCTG
TATCGTTCTGTCAATATTAAAGCTGGAATAGTTTCTACTACCAACGGTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis