Browse Element(s) Details


OsAffx.3635.1.S1_s_at

Description tigr:9631.m05669
TID=OsAffx.3635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57690Os.15575.1.S1_at11/113+32818329..32825391Aldehyde oxidase 1, putative, expressed
LOC_Os03g57720Os.15575.1.S1_at3/113+32836339..32837447aldehyde oxidase-2, putative, expressed
LOC_Os03g57730OsAffx.3634.1.S1_at11/113+32841829..32842334Plastocyanin-like domain containing protein
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed
LOC_Os03g57770OsAffx.25747.1.S1_at11/113+32858482..32859169expressed protein
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3635.1.S1_s_at--202--8111Chr03:32849204..32849228 (25 bp)
GGACGACGAGATGTCTCCCGCCGAA
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--1030--9291Chr03:32849259..32849461 (25 bp)
TCCGCATCCTAGGTTGCAACCGGTT
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--195--6671Chr03:32849449..32849473 (25 bp)
GTTGCAACCGGTTTGGTGTCATGGC
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--141--10711Chr03:32849483..32849507 (25 bp)
TTGCTGCTGCAGAATGATCAGCTGA
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--464--8491Chr03:32849514..32849538 (25 bp)
TGGCACGGGCGGCTTACCATTTTCA
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--324--8351Chr03:32849521..32849545 (25 bp)
GGCGGCTTACCATTTTCACATAGGG
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--167--7651Chr03:32849544..32849568 (25 bp)
GGGAGCTTAGGCCTTTGTAATATAC
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--360--8111Chr03:32849553..32849577 (25 bp)
GGCCTTTGTAATATACTACTTACTT
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--408--3731Chr03:32849568..32849592 (25 bp)
CTACTTACTTACAGTGTTGTGTGGA
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--256--2571Chr03:32849592..32849616 (25 bp)
AACTGTGGATCATCAGAGGCTGAGA
LOC_Os03g57750
OsAffx.3635.1.S1_s_at--344--8611Chr03:32849620..32849644 (25 bp)
TGGTGATTAGCAGTAGAAACATTCT
LOC_Os03g57750
Target Sequence 
GGACGACGAGATGTCTCCCGCCGAATCCGATCCCACCGCCGCAGCAGCCTCTTCCTCCGCATCCTAGGTTGCAACCGGTT
TGGTGTCATGGCGTGTGTGTGTTGCTGCTGCAGAATGATCAGCTGATTGGAGTGGCACGGGCGGCTTACCATTTTCACAT
AGGGGAGCTTAGGCCTTTGTAATATACTACTTACTTACAGTGTTGTGTGGAACTGTGGATCATCAGAGGCTGAGATGATG
GTGATTAGCAGTAGAAACATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3635.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis