Browse Element(s) Details


OsAffx.25747.1.S1_at

Description tigr:9631.m05672
TID=OsAffx.25747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5777011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57720Os.15575.1.S1_at3/113+32836339..32837447aldehyde oxidase-2, putative, expressed
LOC_Os03g57730OsAffx.3634.1.S1_at11/113+32841829..32842334Plastocyanin-like domain containing protein
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed
LOC_Os03g57770OsAffx.25747.1.S1_at11/113+32858482..32859169expressed protein
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25747.1.S1_at--267--3471Chr03:32858790..32858814 (25 bp)
CAGTGGTGGCTAGCGAGGAACACAT
LOC_Os03g57770
OsAffx.25747.1.S1_at--804--9991Chr03:32858800..32858824 (25 bp)
TAGCGAGGAACACATCACCGGCAAT
LOC_Os03g57770
OsAffx.25747.1.S1_at--469--3551Chr03:32858812..32858836 (25 bp)
CATCACCGGCAATAGCAAGACCGAG
LOC_Os03g57770
OsAffx.25747.1.S1_at--642--6211Chr03:32858849..32858873 (25 bp)
GAGGCGGCAGCAACATCTTCCATCA
LOC_Os03g57770
OsAffx.25747.1.S1_at--972--3251Chr03:32858859..32858883 (25 bp)
CAACATCTTCCATCAAGTGCCGAGA
LOC_Os03g57770
OsAffx.25747.1.S1_at--973--9711Chr03:32858871..32858895 (25 bp)
TCAAGTGCCGAGATCCGGGTATTCT
LOC_Os03g57770
OsAffx.25747.1.S1_at--857--6031Chr03:32858880..32858904 (25 bp)
GAGATCCGGGTATTCTCGTCAAGCC
LOC_Os03g57770
OsAffx.25747.1.S1_at--600--6871Chr03:32858889..32858913 (25 bp)
GTATTCTCGTCAAGCCCTTCTTCGT
LOC_Os03g57770
OsAffx.25747.1.S1_at--448--8571Chr03:32858933..32858957 (25 bp)
TGGATCTGTCCGAGCTCGAGCACAA
LOC_Os03g57770
OsAffx.25747.1.S1_at--262--9371Chr03:32858948..32858972 (25 bp)
TCGAGCACAAGGCTGCTAGCTAGTT
LOC_Os03g57770
OsAffx.25747.1.S1_at--1057--4851Chr03:32858962..32858986 (25 bp)
GCTAGCTAGTTGGATCTGGCGATGT
LOC_Os03g57770
Target Sequence 
CAGTGGTGGCTAGCGAGGAACACATCACCGGCAATAGCAAGACCGAGGGGAAGACAATGGAGGCGGCAGCAACATCTTCC
ATCAAGTGCCGAGATCCGGGTATTCTCGTCAAGCCCTTCTTCGTCCCGTCCTCTTCTTCCTCCTGGATCTGTCCGAGCTC
GAGCACAAGGCTGCTAGCTAGTTGGATCTGGCGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis