Browse Element(s) Details


OsAffx.5056.1.S1_x_at

Description tigr:9634.m03721
TID=OsAffx.5056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3897011/11Leucine Rich Repeat family protein, expressed
LOC_Os03g577801/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38950Os.52171.1.S1_at11/116+23104231..23112077ABC transporter family protein, putative, expressed
LOC_Os06g38960Os.9684.1.S1_at11/116+23118062..23121172expressed protein
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000OsAffx.15829.1.S1_at11/116+23155212..23155634hypothetical protein
LOC_Os06g39010OsAffx.15830.1.S1_at11/116+23156564..23157463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5056.1.S1_x_at--544--2571Chr06:23134017..23134041 (25 bp)
AACGTGTTTCTGCTGCCATTGGTGT
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--971--1331Chr06:23134046..23134070 (25 bp)
AGAGGGATCCAGTTTTTGCATGATG
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--119--9051Chr06:23134062..23134086 (25 bp)
TGCATGATGTGACTGCTCCGGGCAT
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--172--1491Chr06:23134148..23134172 (25 bp)
AGCAACTTTAACCTCCCGTTGATAT
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--1037--1411Chr06:23134306..23134522 (25 bp)
AGACAATGATCTCGGCAGCGTGCCA
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--717--6311Chr06:23134544..23134568 (25 bp)
GATGACATTTACCAGTTCGGCCTAA
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--1146--6711Chr06:23134558..23134582 (25 bp)
GTTCGGCCTAATTCTTCTGGAAGTA
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--349--5831Chr06:23134613..23134636 (24 bp)
GACCTGGACTCCCTGAAAACTCAGA
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--256--1511Chr06:23134808..23134832 (25 bp)
AGCACGGTGGCCGAGATAGCACTCA
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--632--6491Chr06:23134822..23134846 (25 bp)
GATAGCACTCAATTGCATTGCCAGT
LOC_Os06g38970
OsAffx.5056.1.S1_x_at--143--972Chr06:23134872..23134896 (25 bp)
AGGACGTCCTCTGGAACCTGCAGTA
LOC_Os06g38970
Target Sequence 
AACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAAT
GATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAAC
TAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGCACAG
AACAAGGGGACAAGGATGACATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCCA
AAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTTATTGAAAGACATGGCGGACCC
GACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCACGGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAA
GCAGCCGGCCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis