Browse Element(s) Details


Os.54270.1.S1_at

Description gb:AK102950.1
DB_XREF= gi:32988159
TID=Os.54270.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115D13, full insert sequence.
FL= gb:AK102950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g577901/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed
LOC_Os03g57770OsAffx.25747.1.S1_at11/113+32858482..32859169expressed protein
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54270.1.S1_at--839--3012Chr03:23031970..23031994 (25 bp)
AATGCCATGAATTCGCAAAGTGTTC
NONE
Os.54270.1.S1_at--835--7131Chr03:23031989..23032013 (25 bp)
GTGTTCAAACCCACTAAAGTGTTAT
NONE
Os.54270.1.S1_at--876--2351Chr03:23032151..23032175 (25 bp)
AAAGCGTTCTACTCATTAGCCTCAT
NONE
Os.54270.1.S1_at--766--9992Chr03:23032167..23032191 (25 bp)
TAGCCTCATCATCGAAATTTCGTGA
NONE
Os.54270.1.S1_at--83--9431Chr03:23032186..23032210 (25 bp)
TCGTGACGTGTTAGTGTCCTTTTTC
NONE
Os.54270.1.S1_at--990--10071Chr03:23032217..23032241 (25 bp)
TTTCTTCTAGCACCGGTTGGAGGTC
NONE
Os.54270.1.S1_at--713--8551Chr03:23032234..23032258 (25 bp)
TGGAGGTCTGCATCCTGACAAAGAT
NONE
Os.54270.1.S1_at--1065--432Chr03:23032260..23032284 (25 bp)
ATCTTTTAGGTGAATGTCGCTCGCG
NONE
Os.54270.1.S1_at--871--8713Chr03:23032274..23032298 (25 bp)
TGTCGCTCGCGGACAGACCTACGGA
NONE
Os.54270.1.S1_at--983--6732Chr03:23032469..23032493 (25 bp)
GTTCAGGGTTGTACATTCCTACAAA
NONE
Os.54270.1.S1_at--968--6631Chr03:23032508..23032532 (25 bp)
GTTGTAGCGTACACACATAATGGAA
NONE
Target Sequence 
AATGCCATGAATTCGCAAAGTGTTCAAACCCACTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTATTCGGGATGGAAA
GGCAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAACACACAACATTACATATT
AGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTT
CTTTCCCTTTCTTCTAGCACCGGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAG
ACCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTTACTGGTGGCGATTCATCAA
GCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCCCCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTG
CCAGCATATCCCATCATTTGTTCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATG
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis