Browse Element(s) Details


OsAffx.25749.1.S1_s_at

Description tigr:9631.m05684
TID=OsAffx.25749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative beta-1,3 glucanase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5788011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g073402/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25749.1.S1_s_at--169--9712Chr07:3670047..3670491 (25 bp)
TCAACGCCTACTTCCAGGTTCAGAA
LOC_Os07g07340
OsAffx.25749.1.S1_s_at--79--6751Chr03:32911815..32911839 (25 bp)
GTTCAGAACCAGAAGGACGACGCCT
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--1108--5291Chr03:32911826..32911850 (25 bp)
GAAGGACGACGCCTGCGACTTCCAG
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--613--5152Chr07:3670143..3670203 (25 bp)
GCAACTTCACAATACAGATCGCCGC
LOC_Os07g07340
OsAffx.25749.1.S1_s_at--576--9991Chr03:32911960..32911984 (25 bp)
TAGCGCTGCTGGCTTTGTTCCGTTT
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--998--10651Chr03:32911977..32912001 (25 bp)
TTCCGTTTGTTCTTGCTGCATTAGC
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--1028--9031Chr03:32912012..32912036 (25 bp)
TGCAGTTATATTACACAGGCTTTTG
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--552--3491Chr03:32912027..32912051 (25 bp)
CAGGCTTTTGATTTTGTTGCAGCAT
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--402--6671Chr03:32912042..32912066 (25 bp)
GTTGCAGCATTCTTGGTGTTGTTAG
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--300--2351Chr03:32912075..32912099 (25 bp)
AAAGCCTTTGTACTGGAGATACGTT
LOC_Os03g57880
OsAffx.25749.1.S1_s_at--511--2071Chr03:32912133..32912157 (25 bp)
ACTTGATGTGCTCAAATGGCGACAT
LOC_Os03g57880
Target Sequence 
TCAACGCCTACTTCCAGGTTCAGAACCAGAAGGACGACGCCTGCGACTTCCAGGGGCTCGCCATGCCCACGCAGACCGAC
CCCTCCACCCCGGCCTGCAACTTCACAATACAGATCGCCGCCACCTCGGCGGGTCACCGGCGGCGAGCCGGCGCCGCCGT
GCTAGCGCTGCTGGCTTTGTTCCGTTTGTTCTTGCTGCATTAGCATTGATCTACTGCAGTTATATTACACAGGCTTTTGA
TTTTGTTGCAGCATTCTTGGTGTTGTTAGTAATTAGTAAAGCCTTTGTACTGGAGATACGTTTTCAGTATATACATACTG
AGATAATTTTCACAAACTTGATGTGCTCAAATGGCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25749.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis