Browse Element(s) Details


OsAffx.13535.1.S1_at

Description tigr:9631.m05691
TID=OsAffx.13535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5793011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13535.1.S1_at--994--5811Chr03:32928535..32928559 (25 bp)
GACCGATGGTGAGACTTCATGCCGC
LOC_Os03g57930
OsAffx.13535.1.S1_at--96--10551Chr03:32928387..32928411 (25 bp)
TTCATCGTGGCGAAGCTCTTGCAGC
LOC_Os03g57930
OsAffx.13535.1.S1_at--1006--5391Chr03:32928376..32928400 (25 bp)
GAAGCTCTTGCAGCGCTCGGACTTC
LOC_Os03g57930
OsAffx.13535.1.S1_at--698--2351Chr03:32928223..32928247 (25 bp)
AAAGCTCGCGGAAGCGACACGCGGT
LOC_Os03g57930
OsAffx.13535.1.S1_at--538--1051Chr03:32928161..32928185 (25 bp)
AGGGCGTGCCGGTGACCGTCTACCT
LOC_Os03g57930
OsAffx.13535.1.S1_at--514--1611Chr03:32928110..32928134 (25 bp)
AGCTGAGCAAGTTCAATGGCACCAA
LOC_Os03g57930
OsAffx.13535.1.S1_at--86--8511Chr03:32928094..32928118 (25 bp)
TGGCACCAAGGCCACGGTGATCAAC
LOC_Os03g57930
OsAffx.13535.1.S1_at--907--6971Chr03:32928061..32928085 (25 bp)
GTACGCCAAATTCATGGCGGACGGT
LOC_Os03g57930
OsAffx.13535.1.S1_at--44--6391Chr03:32928021..32928045 (25 bp)
GATCGCGTTGAGGTATTGGCATTCC
LOC_Os03g57930
OsAffx.13535.1.S1_at--363--1011Chr03:32928011..32928035 (25 bp)
AGGTATTGGCATTCCGGCGGCCGCC
LOC_Os03g57930
OsAffx.13535.1.S1_at--636--9271Chr03:32927999..32928023 (25 bp)
TCCGGCGGCCGCCTAATTATCGTCT
LOC_Os03g57930
Target Sequence 
GACCGATGGTGAGACTTCATGCCGCCGCCGGCCTCCACCACCCACCGCCGTTGCCGCCGCCGCCGCCGCCGTCGTCTCGG
AGCCGGCGTGGGTGCGTGCCGAGCTCTTCCCCCTCCATGGCCTCCCCATGGACATGCCGCCGCTCCGCTTCATCGTGGCG
AAGCTCTTGCAGCGCTCGGACTTCTACCCGCAGCAGGCGCGCTTCCTCCTCCCGTCCAGCGCCGCCGACAACCTCCGCGC
TTTCCTCTCCGCCCAAGAGGGAGAAGCGTGCGGCCTCAACGAAACCAGCCGCCGCCGCCGCCGCCGCAGAGAAAAGCTCG
CGGAAGCGACACGCGGTGGCGGCGAGAAGAGAAGGGAGGAGCCGCCGAGGTACGAGGGCGTGCCGGTGACCGTCTACCTG
CGCGGCGGGCTCGTGTGCGAGCTGAAGCTGAGCAAGTTCAATGGCACCAAGGCCACGGTGATCAACGGCGGCGGGTACGC
CAAATTCATGGCGGACGGTGGCCTCGTCAGGGGTGATCGCGTTGAGGTATTGGCATTCCGGCGGCCGCCTAATTATCGTC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis