Browse Element(s) Details


Os.21838.1.S1_at

Description gb:AK121620.1
DB_XREF= gi:37991243
TID=Os.21838.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044P16, full insert sequence.
FL= gb:AK121620.1 gb:AK103407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5794011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21838.1.S1_at--702--2691Chr03:32945205..32945229 (25 bp)
AAGCTGCCTTCATCTTGAGCATACC
LOC_Os03g57940
Os.21838.1.S1_at--734--10171Chr03:32945433..32945457 (25 bp)
TATACATCGCTTCAATCTGCTACGG
LOC_Os03g57940
Os.21838.1.S1_at--856--6911Chr03:32945465..32945489 (25 bp)
GTATGCTGACAGCTTCAACATTTCG
LOC_Os03g57940
Os.21838.1.S1_at--272--10311Chr03:32945485..32945509 (25 bp)
TTTCGAAGCTCCAATGTGAAGCCAT
LOC_Os03g57940
Os.21838.1.S1_at--938--7351Chr03:32945500..32945524 (25 bp)
GTGAAGCCATGTCTAGCTACTACTA
LOC_Os03g57940
Os.21838.1.S1_at--1127--9891Chr03:32945520..32945544 (25 bp)
TACTAGCATTTTGCAGTGAGCTGCC
LOC_Os03g57940
Os.21838.1.S1_at--582--1111Chr03:32945534..32945558 (25 bp)
AGTGAGCTGCCAACCGATCAAATCT
LOC_Os03g57940
Os.21838.1.S1_at--208--3091Chr03:32945602..32945626 (25 bp)
AATCAATGGCTGACATCACCGGCCT
LOC_Os03g57940
Os.21838.1.S1_at--1078--8231Chr03:32945673..32945697 (25 bp)
GGCAAATGTTGTACCAGATCGGATA
LOC_Os03g57940
Os.21838.1.S1_at--770--8051Chr03:32945699..32945723 (25 bp)
GGAGACCTTTGTCCATAAGCTAAGC
LOC_Os03g57940
Os.21838.1.S1_at--286--1611Chr03:32945731..32945755 (25 bp)
AGCTGCATGGCGGTGCTAAGATCAT
LOC_Os03g57940
Target Sequence 
AAGCTGCCTTCATCTTGAGCATACCAAAGAGGAAGCCAATGGACGAGACACAAGAAACTCTTCGAACTTCCTCCTTTCCC
AGCAACCATGTCAAGGAAAAATGGTCAAAGAACCTATACATCGCTTCAATCTGCTACGGCCGGACCGTATGCTGACAGCT
TCAACATTTCGAAGCTCCAATGTGAAGCCATGTCTAGCTACTACTAGCATTTTGCAGTGAGCTGCCAACCGATCAAATCT
CCCTTGATTGGGAGATCTGAAGCAAGGAAAAAAAAAAGAAACAAATCAATGGCTGACATCACCGGCCTCTTGCAGCCATN
TATTCTAACTGTAAAAATTGAAAAAAAAAATCATGGCAAATGTTGTACCAGATCGGATATGGAGACCTTTGTCCATAAGC
TAAGCTAGTATAAGCTGCATGGCGGTGCTAAGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis