Browse Element(s) Details


OsAffx.25751.1.S1_at

Description tigr:9631.m05696
TID=OsAffx.25751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5798011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25751.1.S1_at--831--9331Chr03:32965119..32965143 (25 bp)
TCGCCGCCGATCATCCAGGGGCAGA
LOC_Os03g57980
OsAffx.25751.1.S1_at--944--7311Chr03:32965029..32965053 (25 bp)
GTGCTACTGATAGCTGCATCCGTTT
LOC_Os03g57980
OsAffx.25751.1.S1_at--382--4851Chr03:32965027..32965051 (25 bp)
GCTACTGATAGCTGCATCCGTTTTG
LOC_Os03g57980
OsAffx.25751.1.S1_at--839--9911Chr03:32965025..32965049 (25 bp)
TACTGATAGCTGCATCCGTTTTGGC
LOC_Os03g57980
OsAffx.25751.1.S1_at--251--1971Chr03:32965024..32965048 (25 bp)
ACTGATAGCTGCATCCGTTTTGGCT
LOC_Os03g57980
OsAffx.25751.1.S1_at--78--8831Chr03:32965022..32965046 (25 bp)
TGATAGCTGCATCCGTTTTGGCTTG
LOC_Os03g57980
OsAffx.25751.1.S1_at--12--311Chr03:32965020..32965044 (25 bp)
ATAGCTGCATCCGTTTTGGCTTGAT
LOC_Os03g57980
OsAffx.25751.1.S1_at--226--9991Chr03:32965019..32965043 (25 bp)
TAGCTGCATCCGTTTTGGCTTGATT
LOC_Os03g57980
OsAffx.25751.1.S1_at--943--1591Chr03:32965018..32965042 (25 bp)
AGCTGCATCCGTTTTGGCTTGATTA
LOC_Os03g57980
OsAffx.25751.1.S1_at--54--4771Chr03:32965017..32965041 (25 bp)
GCTGCATCCGTTTTGGCTTGATTAG
LOC_Os03g57980
OsAffx.25751.1.S1_at--149--9051Chr03:32965015..32965039 (25 bp)
TGCATCCGTTTTGGCTTGATTAGGA
LOC_Os03g57980
Target Sequence 
TCGCCGCCGATCATCCAGGGGCAGAGGCCACTGTTGCTGCCAAGCTCCGCGTGGAGGAGAGCTCATGTGTCCATGGCGTC
TGTATCAGTAGTGCTACTGATAGCTGCATCCGTTTTGGCTTGATTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis