Browse Element(s) Details


Os.19368.1.S1_at

Description gb:AK058269.1
DB_XREF= gi:32968287
TID=Os.19368.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.19368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B02, full insert sequence.
FL= gb:AK070933.1 gb:AK058269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5806011/115'-3' exoribonuclease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004534molecular_function5'-3' exoribonuclease activity
GO:0008409molecular_function5'-3' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19368.1.S1_at--264--6231Chr03:32998757..32998781 (25 bp)
GATGGCCATGGATAGGCAGCCCAAA
LOC_Os03g58060
Os.19368.1.S1_at--983--4231Chr03:32998838..32998862 (25 bp)
CCGTGTCAAAGGTCAAGGTCCCAAT
LOC_Os03g58060
Os.19368.1.S1_at--527--7231Chr03:32998855..32998879 (25 bp)
GTCCCAATGGCCTGAGTGAGTGAAA
LOC_Os03g58060
Os.19368.1.S1_at--706--5591Chr03:32998889..32998913 (25 bp)
GAAATCATCCTCAAATCGCAGTATA
LOC_Os03g58060
Os.19368.1.S1_at--623--9351Chr03:32998904..32998928 (25 bp)
TCGCAGTATAACCAGGAATCGCCTT
LOC_Os03g58060
Os.19368.1.S1_at--892--6851Chr03:32998932..32998956 (25 bp)
GTTTGTTTGTACGATGTTCCATGTG
LOC_Os03g58060
Os.19368.1.S1_at--778--5331Chr03:32998991..32999015 (25 bp)
GAAGTCTGCAAGCTCCTAGTGAAAG
LOC_Os03g58060
Os.19368.1.S1_at--117--4191Chr03:32999045..32999069 (25 bp)
CCCATCCATTTACATTCCATCATTG
LOC_Os03g58060
Os.19368.1.S1_at--861--2331Chr03:32999175..32999199 (25 bp)
AAAGCACCGCCATTGTAAATCTGTA
LOC_Os03g58060
Os.19368.1.S1_at--808--3711Chr03:32999263..32999287 (25 bp)
CTACCCAGTGCTGACTATGTCTGTA
LOC_Os03g58060
Os.19368.1.S1_at--814--10111Chr03:32999278..32999302 (25 bp)
TATGTCTGTATTATTGCTCCTGGGT
LOC_Os03g58060
Target Sequence 
GATGGCCATGGATAGGCAGCCCAAACAAGATAACTCGAGATCACAGCATGACAAGAGACAGCAGGCTACTAAGGTAGTAT
ACCGTGTCAAAGGTCAAGGTCCCAATGGCCTGAGTGAGTGAAAAGTATCCATGAAATCATCCTCAAATCGCAGTATAACC
AGGAATCGCCTTTAAGTTTGTTTGTACGATGTTCCATGTGAGTGGGCATGCTGCTACTGGGAGAAGCGACACTGGAAGTC
TGCAAGCTCCTAGTGAAAGCAGCCATAGGATTTACTTTATTTTACCACCCCATCCATTTACATTCCATCATTGAGTTGTT
GTATAACGTCCAAAGGAGTTGGTTTTGGTTAAGTTATGATTTAGGACAGGGATTTAGACAGAAACTTCCGTAGTTAGGAC
AAACCTTGAGCAACAGGCAAAGCACCGCCATTGTAAATCTGTAAGCTAGANCAACTCTTATCAACGCTGATGTGATATTG
TTACTTCTTTTGTGAACACTCCCTGGCTACCCAGTGCTGACTATGTCTGTATTATTGCTCCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis