Browse Element(s) Details


Os.11704.1.S1_at

Description gb:AK068731.1
DB_XREF= gi:32978750
TID=Os.11704.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158I01, full insert sequence.
FL= gb:AK068731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5809011/11expressed protein
LOC_Os06g122801/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11704.1.S1_at--597--5671Chr03:33011221..33011245 (25 bp)
GACATCGCGGAATGCGTTTGCGCTA
LOC_Os03g58090
Os.11704.1.S1_at--675--611Chr03:33011210..33011234 (25 bp)
ATGCGTTTGCGCTATCCAATGATCC
LOC_Os03g58090
Os.11704.1.S1_at--1113--3731Chr03:33011174..33011198 (25 bp)
CTCCCCAACGTTGCTGTAAATTGTA
LOC_Os03g58090
Os.11704.1.S1_at--385--791Chr03:33011147..33011171 (25 bp)
ATGGGAGTTTCGCACGTAATCATCG
LOC_Os03g58090
Os.11704.1.S1_at--641--7051Chr03:33011132..33011156 (25 bp)
GTAATCATCGATCTTTCTTTCCTCT
LOC_Os03g58090
Os.11704.1.S1_at--663--4252Chr06:6606197..6606552 (25 bp)
CCGGTGCTCAGTTCCATCAGTACAT
LOC_Os06g12280
Os.11704.1.S1_at--36--10331Chr03:33010921..33010945 (25 bp)
TTTCACAATGCCTGGTGGTGTAGCC
LOC_Os03g58090
Os.11704.1.S1_at--985--1091Chr03:33010853..33010877 (25 bp)
AGTGGAAACAGATCCTGCCATCCTG
LOC_Os03g58090
Os.11704.1.S1_at--1083--3491Chr03:33010740..33010764 (25 bp)
CATGGACGCTGAGTTCTGACAAATT
LOC_Os03g58090
Os.11704.1.S1_at--383--10471Chr03:33010693..33010717 (25 bp)
TTACTTCTCATGATGGTGTCCAAGC
LOC_Os03g58090
Os.11704.1.S1_at--507--8931Chr03:33010654..33010678 (25 bp)
TGACCTGAATAACCTCCCCATTTGA
LOC_Os03g58090
Target Sequence 
GACATCGCGGAATGCGTTTGCGCTATCCAATGATCCNAGAAGGGTTTCCTCCCCAACGTTGCTGTAAATTGTAAAATGGG
AGTTTCGCACGTAATCATCGATCTTTCTTTCCTCTCACTGGAGGGTCNAGGTTGTTTTGTTGACCCCCTTCATGAGTTCC
ACTGAAGCTCCCCAGCATCCGGTGCTCAGTTCCATCAGTACATGCCGCCGCCATAGNTGCCTAGCTGTAGATGTTTCNGC
CTTGTGTTGATCAGATTATGTGTTGTTTGGGGTTGGTATTGGTTGCTGAGGAGTGATACATTTTTCACAATGCCTGGTGG
TGTAGCCAAGATTATTGCTTCTGTAAAGTTTACAATATAAAGTTATTGAGAGTGGAAACAGATCCTGCCATCCTGTGCNC
ACTTTGACAAAAAAGCATATGTAAAGCTTATTGATTTGAAGCTGTCAACTGAAAAAGTAAGAGAACTTGGTTGGTGTTAG
TATCATGGACGCTGAGTTCTGACAAATTGTATGTATTATCATTTTGTTCATTACTTCTCATGATGGTGTCCAAGCAAATA
ACTCTTCAGTGACCTGAATAACCTCCCCATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis