Browse Element(s) Details


Os.14883.1.S1_a_at

Description gb:AK102390.1
DB_XREF= gi:32987599
TID=Os.14883.1
CNT=64
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.14883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092E14, full insert sequence.
FL= gb:AK061765.1 gb:AK102390.1 gb:AK104382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5807011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14883.1.S1_a_at--66--9871Chr03:33003249..33003273 (25 bp)
TACAGCATCTCCTTACTCTTATGAT
LOC_Os03g58070
Os.14883.1.S1_a_at--123--9911Chr03:33003262..33003286 (25 bp)
TACTCTTATGATAGGCCAGCTGCAC
LOC_Os03g58070
Os.14883.1.S1_a_at--8--711Chr03:33003319..33003343 (25 bp)
ATGAGGGAGCCCTATGCATACCACC
LOC_Os03g58070
Os.14883.1.S1_a_at--750--1711Chr03:33003341..33003365 (25 bp)
ACCACCCATCTGAGGTATCCAGCGT
LOC_Os03g58070
Os.14883.1.S1_a_at--1031--9951Chr03:33003403..33003427 (25 bp)
TACCCGGCCTATGCTGGATACAGCA
LOC_Os03g58070
Os.14883.1.S1_a_at--40--9871Chr03:33003439..33003463 (25 bp)
TACAGCAATGCAATGGCCCCAGCCT
LOC_Os03g58070
Os.14883.1.S1_a_at--222--1731Chr03:33003553..33003577 (25 bp)
ACCATGGCCATGTTTTGTAGTGACT
LOC_Os03g58070
Os.14883.1.S1_a_at--911--7571Chr03:33003600..33003624 (25 bp)
GGGCGTGTGTTCCTTAATACTAGAA
LOC_Os03g58070
Os.14883.1.S1_a_at--837--6331Chr03:33003625..33003649 (25 bp)
GATGCTTGTGTTGGTTAGTTCTCCC
LOC_Os03g58070
Os.14883.1.S1_a_at--253--10051Chr03:33003640..33003664 (25 bp)
TAGTTCTCCCCGTTATTAGCTGCTC
LOC_Os03g58070
Os.14883.1.S1_a_at--790--3771Chr03:33003662..33003686 (25 bp)
CTCTCGCTACTTCGCACTGAAGAAA
LOC_Os03g58070
Target Sequence 
TACAGCATCTCCTTACTCTTATGATAGGCCAGCTGCACACCCCCTCTACTGTGGCCNAGAACACACTGGCAATGAGGGAG
CCCTATGCATACCACCACCCATCTGAGGTATCCAGCGTCNGCCTCGGCATGTCATACCCATCCCCTCCCATNACCTACCC
GGCCTATGCTGGATACAGCAATGGAATCGGCTACAGCAATGCAATGGCCCCAGCCTTTCACCACCAGGCTTACTACCGGT
AGGATCAGTCGAAGCCGATGAAATGACAATGAGCTGAATCGCTGATGGTGGCAGGGCGGCTCGCCACCATGGCCATGTTT
TGTAGTGACTGACTACAACGGTAGGTGGGTGGGGGCGTGTGTTCCTTAATACTAGAAGATGCTTGTGTTGGTTAGTTCTC
CCCGTTATTAGCTGCTCTCGCTACTTCGCACTGAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14883.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis