Browse Element(s) Details


Os.26543.1.S1_at

Description gb:AK064239.1
DB_XREF= gi:32974257
TID=Os.26543.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full insert sequence.
FL= gb:AK064239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5811011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26543.1.S1_at--278--9711Chr03:33023347..33023371 (25 bp)
TCAACAGCGGCATCTCGTCGTGCAT
LOC_Os03g58110
Os.26543.1.S1_at--1040--4771Chr03:33023253..33023277 (25 bp)
GCTGCCGGAGACCATCGGCCACATG
LOC_Os03g58110
Os.26543.1.S1_at--20--9391Chr03:33023095..33023119 (25 bp)
TCGAGGTGCCGCACGTTGACGACCG
LOC_Os03g58110
Os.26543.1.S1_at--565--9171Chr03:33023089..33023113 (25 bp)
TGCCGCACGTTGACGACCGCCAGAA
LOC_Os03g58110
Os.26543.1.S1_at--1067--4611Chr03:33023032..33023056 (25 bp)
GCGAGGAGTGCATCGCGTTCCTGCA
LOC_Os03g58110
Os.26543.1.S1_at--231--4531Chr03:33022920..33022944 (25 bp)
GCCGCCGGTATATTGATCTGCGGTA
LOC_Os03g58110
Os.26543.1.S1_at--692--6871Chr03:33022913..33022937 (25 bp)
GTATATTGATCTGCGGTAAAACTGT
LOC_Os03g58110
Os.26543.1.S1_at--320--4111Chr03:33022901..33022925 (25 bp)
GCGGTAAAACTGTAATTGCTGTAAC
LOC_Os03g58110
Os.26543.1.S1_at--78--10711Chr03:33022886..33022910 (25 bp)
TTGCTGTAACTGTTTTCTGCCTTTG
LOC_Os03g58110
Os.26543.1.S1_at--89--3831Chr03:33022870..33022894 (25 bp)
CTGCCTTTGAGCTGTGAGAAAGGGT
LOC_Os03g58110
Os.26543.1.S1_at--332--3151Chr03:33022842..33022866 (25 bp)
AATTCAGCAAGTGTATACATAAGGT
LOC_Os03g58110
Target Sequence 
TCAACAGCGGCATCTCGTCGTGCATCCCGCCGGAGATCGGCAAGCTGGACAAGCTCACCGTGCTCGACCTCAGCTTCAAC
GNCTTCGCCGGCGCGCTGCCGGAGACCATCGGCCACATGCNGGGCGCTGGAGCAGCTCAACGTCGCGCACAANGGCCTCG
CCGGCGAGATCCCGGACTCCATCTGNGCCCTCCCGCACCTCAAGAACTTCACCTACTCCCACAACTTCTTCTGCGGCGAG
CCGCACCGCTGCCTCGAGGTGCCGCACGTTGACGACCGCCAGAACTGCATCGCCGGCCGCCCCGACCAGCGCTCCGGCGA
GGAGTGCATCGCGTTCCTGCACCGCCCGCCGGTGCACTGCGACGCGCACGGCTGCATCGCGCCGCTGTCGCCGCCGCCGC
CGCCGCCGCCGGTGCACTACGCGCCTCCGCCGCCGGTATATTGATCTGCGGTAAAACTGTAATTGCTGTAACTGTTTTCT
GCCTTTGAGCTGTGAGAAAGGGTAAAAATTCAGCAAGTGTATACATAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis