Browse Element(s) Details


Os.7667.1.S1_x_at

Description gb:AU101730
DB_XREF= gi:9865980
DB_XREF=AU101730
CLONE=S10067
TID=Os.7667.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7667 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5815011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7667.1.S1_x_at--310--4971Chr03:33042072..33042096 (25 bp)
GCATCACGCTTTTGTTGATTCTGCT
LOC_Os03g58150
Os.7667.1.S1_x_at--169--3571Chr03:33042071..33042095 (25 bp)
CATCACGCTTTTGTTGATTCTGCTG
LOC_Os03g58150
Os.7667.1.S1_x_at--595--391Chr03:33042070..33042094 (25 bp)
ATCACGCTTTTGTTGATTCTGCTGT
LOC_Os03g58150
Os.7667.1.S1_x_at--286--9691Chr03:33042069..33042093 (25 bp)
TCACGCTTTTGTTGATTCTGCTGTA
LOC_Os03g58150
Os.7667.1.S1_x_at--719--3351Chr03:33042068..33042092 (25 bp)
CACGCTTTTGTTGATTCTGCTGTAA
LOC_Os03g58150
Os.7667.1.S1_x_at--892--1831Chr03:33042067..33042091 (25 bp)
ACGCTTTTGTTGATTCTGCTGTAAA
LOC_Os03g58150
Os.7667.1.S1_x_at--252--3911Chr03:33042025..33042049 (25 bp)
CTGGAGACTTTTTATGGAACCGCAT
LOC_Os03g58150
Os.7667.1.S1_x_at--709--8511Chr03:33042024..33042048 (25 bp)
TGGAGACTTTTTATGGAACCGCATA
LOC_Os03g58150
Os.7667.1.S1_x_at--1126--1351Chr03:33042021..33042045 (25 bp)
AGACTTTTTATGGAACCGCATAATT
LOC_Os03g58150
Os.7667.1.S1_x_at--725--5691Chr03:33042020..33042044 (25 bp)
GACTTTTTATGGAACCGCATAATTG
LOC_Os03g58150
Os.7667.1.S1_x_at--997--2031Chr03:33042019..33042043 (25 bp)
ACTTTTTATGGAACCGCATAATTGA
LOC_Os03g58150
Target Sequence 
GCATCACGCTTTTGTTGATTCTGCTGTAAANTCTTGCTTAGTGGNNCCTGGAGACTTTTTATGGAACCGCATAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7667.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis