Browse Element(s) Details


Os.11421.1.S1_at

Description gb:AK064912.1
DB_XREF= gi:32974930
TID=Os.11421.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11421 (NCBI UniGene Cluster)
UG_TITLE=Clone SI2 sucrose-regulated mRNA sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M11, full insert sequence.
FL= gb:AK064912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5817011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58180NANA3+33076510..33076953hypothetical protein
LOC_Os03g58190OsAffx.13538.1.S1_x_at11/113+33077557..33080431expressed protein
LOC_Os03g58190Os.56300.1.S1_at11/113+33077557..33080431expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010044biological_processresponse to aluminum ion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11421.1.S1_at--1081--5351Chr03:33056694..33056718 (25 bp)
GAAGAAGGATAGCAGCATTCCTAGA
LOC_Os03g58170
Os.11421.1.S1_at--694--5291Chr03:33056697..33056721 (25 bp)
GAAGGATAGCAGCATTCCTAGAGTT
LOC_Os03g58170
Os.11421.1.S1_at--1095--7931Chr03:33056700..33056724 (25 bp)
GGATAGCAGCATTCCTAGAGTTGGC
LOC_Os03g58170
Os.11421.1.S1_at--717--6471Chr03:33056701..33056725 (25 bp)
GATAGCAGCATTCCTAGAGTTGGCA
LOC_Os03g58170
Os.11421.1.S1_at--973--10011Chr03:33056703..33056727 (25 bp)
TAGCAGCATTCCTAGAGTTGGCAGC
LOC_Os03g58170
Os.11421.1.S1_at--956--5051Chr03:33056705..33056729 (25 bp)
GCAGCATTCCTAGAGTTGGCAGCGC
LOC_Os03g58170
Os.11421.1.S1_at--1138--3391Chr03:33056706..33056730 (25 bp)
CAGCATTCCTAGAGTTGGCAGCGCT
LOC_Os03g58170
Os.11421.1.S1_at--555--3651Chr03:33057099..33057123 (25 bp)
CTTCTGTATGTGAAGTGATCTTCCC
LOC_Os03g58170
Os.11421.1.S1_at--165--6931Chr03:33057104..33057128 (25 bp)
GTATGTGAAGTGATCTTCCCTTCTG
LOC_Os03g58170
Os.11421.1.S1_at--1145--771Chr03:33057106..33057130 (25 bp)
ATGTGAAGTGATCTTCCCTTCTGCT
LOC_Os03g58170
Os.11421.1.S1_at--660--7351Chr03:33057108..33057132 (25 bp)
GTGAAGTGATCTTCCCTTCTGCTTG
LOC_Os03g58170
Target Sequence 
GAAGAAGGATAGCAGCATTCCTAGAGTTGGCAGCGCTGCGGATTGGTCCTCGCAATACTAAAACCGTATAAATCGTCAGA
AGCATATGGTATGATGACCTAGAAACCTTTGCTGCAATTACATGGAGAGCACTAGGCTTCCGGGTTGTCCACGGTTACAA
GTGGGCATTTGCCATCTGAAATGTTCATCTGGATGGTCAGCCTTGTGCTGTGCTGCTGTCTGAAATTTCTGTCCTGTCCA
CCATTACTGAAGAATGAGAGCGTGTGGGTCTTGAATTTCCAATAAAACGCAATGCCTTACAGATGTGTAAATAGATGTTT
TTGCTTACTACAATATTTTCTGAACAATCAGCATATCTATAACTGTGGCTAGAATGAATCATCTCTAACGATGTGTGTTC
TGTTACTTCTGTATGTGAAGTGATCTTCCCTTCTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis