Browse Element(s) Details


Os.56300.1.S1_at

Description gb:AK109800.1
DB_XREF= gi:32995009
TID=Os.56300.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F03, full insert sequence.
FL= gb:AK109800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58180NANA3+33076510..33076953hypothetical protein
LOC_Os03g58190OsAffx.13538.1.S1_x_at11/113+33077557..33080431expressed protein
LOC_Os03g58190Os.56300.1.S1_at11/113+33077557..33080431expressed protein
LOC_Os03g58220OsAffx.21756.1.S1_at11/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.3.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.2.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56300.1.S1_at--886--6791Chr03:33077746..33077770 (25 bp)
GTTTTCTACTACTGATCAGGCCTTC
LOC_Os03g58190
Os.56300.1.S1_at--442--3731Chr03:33077741..33077765 (25 bp)
CTACTACTGATCAGGCCTTCTCCAG
LOC_Os03g58190
Os.56300.1.S1_at--595--4311Chr03:33077726..33077750 (25 bp)
CCTTCTCCAGCTTCAGGTTAATTTA
LOC_Os03g58190
Os.56300.1.S1_at--1159--4891Chr03:33077717..33077741 (25 bp)
GCTTCAGGTTAATTTACTCGAGAGA
LOC_Os03g58190
Os.56300.1.S1_at--300--2371Chr03:33077684..33077708 (25 bp)
AAACCTCTTTGTTCGCAACGGCAAT
LOC_Os03g58190
Os.56300.1.S1_at--607--5151Chr03:33077670..33077694 (25 bp)
GCAACGGCAATGTTGCTGATGCTCT
LOC_Os03g58190
Os.56300.1.S1_at--797--6671Chr03:33077659..33077683 (25 bp)
GTTGCTGATGCTCTTTGAAAAATTT
LOC_Os03g58190
Os.56300.1.S1_at--776--10811Chr03:33077626..33077650 (25 bp)
TTGTAATCTTCTCCCATCTCATGTA
LOC_Os03g58190
Os.56300.1.S1_at--1121--9491Chr03:33077617..33077641 (25 bp)
TCTCCCATCTCATGTAGTTCGTGTA
LOC_Os03g58190
Os.56300.1.S1_at--851--6711Chr03:33077601..33077625 (25 bp)
GTTCGTGTAGAACTGTGTCACTGTG
LOC_Os03g58190
Os.56300.1.S1_at--1001--10171Chr03:33077560..33077584 (25 bp)
TATACACATAGAAGAACATTGCGTT
LOC_Os03g58190
Target Sequence 
GTTTTCTACTACTGATCAGGCCTTCTCCAGCTTCAGGTTAATTTACTCGAGAGATTAATCAAAAACCTCTTTGTTCGCAA
CGGCAATGTTGCTGATGCTCTTTGAAAAATTTTTACAAACTTGTAATCTTCTCCCATCTCATGTAGTTCGTGTAGAACTG
TGTCACTGTGGAGAGAGTGAGAGATATATACACATAGAAGAACATTGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis