Browse Element(s) Details


OsAffx.21756.1.S1_at

Description gb:NM_185073.1
DB_XREF= gi:34897231
TID=OsAffx.21756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094F01.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5822011/11transposon protein, putative, unclassified
LOC_Os09g373101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58180NANA3+33076510..33076953hypothetical protein
LOC_Os03g58190OsAffx.13538.1.S1_x_at11/113+33077557..33080431expressed protein
LOC_Os03g58190Os.56300.1.S1_at11/113+33077557..33080431expressed protein
LOC_Os03g58220OsAffx.21756.1.S1_at11/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.3.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.2.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58230Os.10490.1.S1_at11/113+33108780..33111030uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21756.1.S1_at--6--1612Chr09:21552086..21552105 (20 bp)
AGCTGATGGGCATTGCTCTTCGCTC
LOC_Os09g37310
OsAffx.21756.1.S1_at--584--4131Chr03:33093024..33093048 (25 bp)
CGCTCCCGGTGGTCATGGATGCAAA
LOC_Os03g58220
OsAffx.21756.1.S1_at--728--2331Chr03:33093002..33093026 (25 bp)
AAAGAGTGCCATCGGACAAGCCATG
LOC_Os03g58220
OsAffx.21756.1.S1_at--823--5931Chr03:33092946..33092970 (25 bp)
GAGCAGGCCTTTGTAGCGGCATCAA
LOC_Os03g58220
OsAffx.21756.1.S1_at--1062--1611Chr03:33092932..33092956 (25 bp)
AGCGGCATCAACCATTTGTCACTTG
LOC_Os03g58220
OsAffx.21756.1.S1_at--1007--6131Chr03:33092862..33092886 (25 bp)
GAGGGATGCATACGGTCCATTGCTC
LOC_Os03g58220
OsAffx.21756.1.S1_at--785--10491Chr03:33092774..33092798 (25 bp)
TTAACCGCCGATGGATCAGAGACAT
LOC_Os03g58220
OsAffx.21756.1.S1_at--721--1231Chr03:33092719..33092743 (25 bp)
AGATTACCTGAAGCTTTGGTCGCTT
LOC_Os03g58220
OsAffx.21756.1.S1_at--751--10851Chr03:33092704..33092728 (25 bp)
TTGGTCGCTTGTACAATCCGTTGAT
LOC_Os03g58220
OsAffx.21756.1.S1_at--797--551Chr03:33092689..33092713 (25 bp)
ATCCGTTGATTGTTCTACTGCTGTC
LOC_Os03g58220
OsAffx.21756.1.S1_at--892--4731Chr03:33092670..33092694 (25 bp)
GCTGTCTCGGATCGTCTAAGTTGGA
LOC_Os03g58220
Target Sequence 
AGCTGATGGGCATTGCTCTTCGCTCCCGGTGGTCATGGATGCAAAGAGTGCCATCGGACAAGCCATGGCAAGGTTTGACA
ATCCCAACATTGCATAAGGAGCAGGCCTTTGTAGCGGCATCAACCATTTGTCACTTGGGGGATGGGAGGACAATCCTCTT
TTGGGAGGATAGCTGGTTGCGAGAGGGATGCATACGGTCCATTGCTCCGTCCATCTTTGAGCATGTGCCCCCTCGCATCA
GGAGACGCCGGACGGTGTCGGGAGCGCTCCTTAACCGCCGATGGATCAGAGACATCCAGGGCGCGCTGGGGACGCAAGCA
ATCCTAGATTACCTGAAGCTTTGGTCGCTTGTACAATCCGTTGATTGTTCTACTGCTGTCTCGGATCGTCTAAGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis