Browse Element(s) Details


Os.28405.2.S1_at

Description gb:CB668872
DB_XREF= gi:29672597
DB_XREF=OSJNEd16O24.r
CLONE=OSJNEd16O24
TID=Os.28405.2
CNT=16
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.28405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative guanylate binding protein (OSJNBa0094F01.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5824011/11guanylate-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58220OsAffx.21756.1.S1_at11/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.3.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.2.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58230Os.10490.1.S1_at11/113+33108780..33111030uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58270Os.54735.1.S1_at1/113+33138144..33142211retrotransposon protein, putative, unclassified
LOC_Os03g58280OsAffx.10418.1.S1_at5/113+33143525..33146100hypothetical protein
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28405.2.S1_at--64--551Chr03:33125542..33125566 (25 bp)
ATCCCCATTGCCGTATTATTGTCTT
LOC_Os03g58240
Os.28405.2.S1_at--586--10871Chr03:33125568..33125592 (25 bp)
TTGGCTTCTTTACTGGCGATGTTTC
LOC_Os03g58240
Os.28405.2.S1_at--841--9711Chr03:33125659..33125683 (25 bp)
TCAACGCGCCCGAGATCAGACTAAT
LOC_Os03g58240
Os.28405.2.S1_at--296--591Chr03:33125687..33125711 (25 bp)
ATGCTCTTTTTTCCCTGAAAGGACA
LOC_Os03g58240
Os.28405.2.S1_at--144--10691Chr03:33125768..33125792 (25 bp)
TTCCATGCCGCGTTGGAGTGGATTG
LOC_Os03g58240
Os.28405.2.S1_at--1061--11Chr03:33125789..33125813 (25 bp)
ATTGGATTGGATGGGCCTTCTTTTG
LOC_Os03g58240
Os.28405.2.S1_at--303--6711Chr03:33125817..33125841 (25 bp)
GTTCCCTGCCAATGTATCACTGATT
LOC_Os03g58240
Os.28405.2.S1_at--1034--5151Chr03:33125892..33125916 (25 bp)
GCAAGCGTTGTTGTGGTTGGTATAC
LOC_Os03g58240
Os.28405.2.S1_at--464--4851Chr03:33125940..33125964 (25 bp)
GCTAGGCTGCCCTTACGGGATGCGA
LOC_Os03g58240
Os.28405.2.S1_at--29--3991Chr03:33125955..33125979 (25 bp)
CGGGATGCGATCTCATTCATTGATT
LOC_Os03g58240
Os.28405.2.S1_at--1070--7711Chr03:33125997..33126021 (25 bp)
GGTGGATCTTATATAAGGCTTCCTT
LOC_Os03g58240
Target Sequence 
ATCCCCATTGCCGTATTATTGTCTTTTTGGCTTCTTTACTGGCGATGTTTCGGTAGAAGAAAACGGGGCAGCCGATNGTC
ACTCCTGCCACTCCACAACAAGATCTCCCACAAGAACTCAACGCGCCCGAGATCAGACTAATNTGATGCTCTTTTTTCCC
TGAAAGGACAGTACAAAGTATCAAACTTGTAGAAGCAGAAGATAGCTGTGAANCATCTGTCTTGTCTTCCATGCCGCGTT
GGAGTGGATTGGATTGGATGGGCCTTCTTTTGGTGGTTCCCTGCCAATGTATCACTGATTCGTTNCTTGGCCGCGGAAGA
CGATGAAGTCGCNTGCNNTTTGAGCGCGTGCGCAAGCGTTGTTGTGGTTGGTATACGGAGTTTTATGCATTTTTGTNTAG
CTAGGCTGCCCTTACGGGATGCGATCTCATTCATTGATTATTGTTCACNCCCCNCCGGTGGATCTTATATAAGGCTTCCT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28405.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis