Browse Element(s) Details


OsAffx.10418.1.S1_at

Description tigr:9631.m05729
TID=OsAffx.10418.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g582805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58270Os.54735.1.S1_at1/113+33138144..33142211retrotransposon protein, putative, unclassified
LOC_Os03g58280OsAffx.10418.1.S1_at5/113+33143525..33146100hypothetical protein
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58320NANA3+33165663..33167330Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10418.1.S1_at--563--2351Chr03:33143313..33143394 (25 bp)
AAAGCAGAAGCCACGCATGGAAGCA
NONE
OsAffx.10418.1.S1_at--226--4671Chr03:33143432..33143456 (25 bp)
GCGGAGGTGCGCACAAACGGCAACT
NONE
OsAffx.10418.1.S1_at--140--2191Chr03:33143444..33143468 (25 bp)
ACAAACGGCAACTCATTGGCGGTCT
NONE
OsAffx.10418.1.S1_at--726--2571Chr03:33143447..33143471 (25 bp)
AACGGCAACTCATTGGCGGTCTCCT
NONE
OsAffx.10418.1.S1_at--126--6171Chr03:33143498..33143522 (25 bp)
GAGGAGGACCAACTTTATGCGCCCG
NONE
OsAffx.10418.1.S1_at--165--5851Chr03:33143504..33143528 (25 bp)
GACCAACTTTATGCGCCCGAGATGG
NONE
OsAffx.10418.1.S1_at--32--4411Chr03:33143559..33143685 (25 bp)
GCCAGCACATGGCTTACTTCAACTA
LOC_Os03g58280
OsAffx.10418.1.S1_at--661--1491Chr03:33143562..33143688 (25 bp)
AGCACATGGCTTACTTCAACTACAT
LOC_Os03g58280
OsAffx.10418.1.S1_at--436--4771Chr03:33143731..33143755 (25 bp)
GCTGCTGAATCAGGACATCCATCCA
LOC_Os03g58280
OsAffx.10418.1.S1_at--132--9011Chr03:33143736..33143760 (25 bp)
TGAATCAGGACATCCATCCAGCGGC
LOC_Os03g58280
OsAffx.10418.1.S1_at--1063--2331Chr03:33143952..33143976 (25 bp)
AAAGAGAGTGGCTGACCAGGTTGAC
LOC_Os03g58280
Target Sequence 
AAAGCAGAAGCCACGCATGGAAGCAGAGGGAGAGGACGGCGGGGGCGTGGACGAGATCGGCGGCGGAGGTGCGCACAAAC
GGCAACTCATTGGCGGTCTCCTCCGTGGGAGGCCGTGGCCGGCGGCGAGAGGAGGACCAACTTTATGCGCCCGAGATGGC
AAACACCAAGAACATCATAGGAGCACCTCGCCAGCACATGGCTTACTTCAACTACATGGGGATGCTGGCGGCGGAGGGCA
CCTACGACAAGATAGAGGCGCTGCTGAATCAGGACATCCATCCAGCGGCAGGCGGTCGAGGATGCGGTGCCGCCTCGTGC
TCCCGCCGCCGCTTCGCCTCGTGCGCCCGCCGCCGCGTCGCCGGCTGTGTCGCCTCGTGCTCCCGCTGCCGCGTCGCCGG
CCGCCCCGGCGACCTCCTCCCCACCCGCCCCGGCTTGCCCGAGAGGAGAGAAGTGAGAGAGAGAAGGGAGAGAAGAGAGG
AAAGAGAGTGGCTGACCAGGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis