Browse Element(s) Details


Os.14079.1.S1_at

Description gb:AK072595.1
DB_XREF= gi:32982618
TID=Os.14079.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative indole-3-glycerol phosphate lyase (OSJNBa0094F01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125E11, full insert sequence.
FL= gb:AK072595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5830011/11Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58270Os.54735.1.S1_at1/113+33138144..33142211retrotransposon protein, putative, unclassified
LOC_Os03g58280OsAffx.10418.1.S1_at5/113+33143525..33146100hypothetical protein
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58320NANA3+33165663..33167330Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58330Os.27522.1.S1_x_at11/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58330Os.27522.2.S1_at9/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58340Os.13625.1.S1_at10/113+33179257..33183312expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004834molecular_functiontryptophan synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14079.1.S1_at--673--3071Chr03:33154218..33154242 (25 bp)
AATCACAGCCGCCTCAGGAGGATTT
LOC_Os03g58300
Os.14079.1.S1_at--545--6771Chr03:33154073..33154097 (25 bp)
GTTACAGGATCTCGCCAAGACGTGA
LOC_Os03g58300
Os.14079.1.S1_at--497--1911Chr03:33154054..33154078 (25 bp)
ACGTGAACCCGCGTGTTGAGCATCT
LOC_Os03g58300
Os.14079.1.S1_at--807--8491Chr03:33153987..33154011 (25 bp)
TGGCTATGGCATATCAACCCCTGAT
LOC_Os03g58300
Os.14079.1.S1_at--689--3051Chr03:33153667..33153691 (25 bp)
AATCTCTTGGTGATGACTAGCTACA
LOC_Os03g58300
Os.14079.1.S1_at--1025--1071Chr03:33153634..33153658 (25 bp)
AGGGAAGCTGAAGCTGCCTTTCTCA
LOC_Os03g58300
Os.14079.1.S1_at--810--3811Chr03:33153621..33153645 (25 bp)
CTGCCTTTCTCATAGTCTCATAGTT
LOC_Os03g58300
Os.14079.1.S1_at--988--9791Chr03:33153597..33153621 (25 bp)
TAACTGTACCGCAAATTAGCACTAG
LOC_Os03g58300
Os.14079.1.S1_at--125--751Chr03:33153550..33153574 (25 bp)
ATGTATAGGCATCCAGATCCTTGGG
LOC_Os03g58300
Os.14079.1.S1_at--964--7611Chr03:33153527..33153551 (25 bp)
GGGACTGTAAAACACCTCGTCTGTG
LOC_Os03g58300
Os.14079.1.S1_at--111--7991Chr03:33153494..33153518 (25 bp)
GGATGTTAATTCTTCGGTTGTTCGA
LOC_Os03g58300
Target Sequence 
AATCACAGCCGCCTCAGGAGGATTTGTTTACCTGNTTAGTGTCAATGGAGTTACAGGATCTCGCCAAGACGTGAACCCGC
GTGTTGAGCATCTCCTTCAGGAGATTAAGCAGGTCACTGACAAAGCTGTGTGTGTTGGCTATGGCATATCAACCCCTGAT
CATGTTAGACAGATAGCAGAGTGGGGTGCAGATGGGGTGATCATTGGCAGTGCANATGGTGAGGCAGCTGGGTGAAGCAG
CTTCTCCCANAGCAAGGGCTGAAAAGGCTGGAGAAGTATGCTAGGAGCCTGAAGAATGCACTTCCATAGAAGCTATAAAA
ACANAGTTGCTAAATAATGGCATGAGAGATTAATTAATTAATCTCTTGGTGATGACTAGCTACATGCATAAAAGGGAAGC
TGAAGCTGCCTTTCTCATAGTCTCATAGTTAACTGTACCGCAAATTAGCACTAGAAAGTGTTATAGATAATAAGTGATGT
ATAGGCATCCAGATCCTTGGGGACTGTAAAACACCTCGTCTGTGTAGAGGTCGGATGTTAATTCTTCGGTTGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis