Browse Element(s) Details


Os.54735.1.S1_at

Description gb:AK106633.1
DB_XREF= gi:32991842
TID=Os.54735.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D05, full insert sequence.
FL= gb:AK106633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1540011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g582701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15350Os.4184.1.S1_at11/112+8590288..8593763Dof domain, zinc finger family protein, expressed
LOC_Os02g15360NANA2+8599198..8601685expressed protein
LOC_Os02g15370OsAffx.2619.1.S1_at11/112+8602053..8602313hypothetical protein
LOC_Os02g15380OsAffx.12056.1.S1_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380Os.56255.1.S1_x_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380OsAffx.23361.2.S1_x_at1/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15390OsAffx.12056.2.S1_at11/112+8607257..8608177BED zinc finger family protein
LOC_Os02g15400Os.54735.1.S1_at11/112+8609564..8611240retrotransposon protein, putative, unclassified, expressed
LOC_Os02g15410OsAffx.12054.1.S1_at11/112+8612358..8612681hypothetical protein
LOC_Os02g15420OsAffx.20313.1.S1_x_at6/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.18764.1.S1_at1/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.6537.1.S1_at1/112+8626224..8628544hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54735.1.S1_at--1025--2271Chr02:8610685..8610709 (25 bp)
AAATCCGGTGTTTCATGACTGCAGC
LOC_Os02g15400
Os.54735.1.S1_at--619--5131Chr02:8610708..8610732 (25 bp)
GCAAACACATAGCTACTCGGTATCA
LOC_Os02g15400
Os.54735.1.S1_at--620--9912Chr02:8610807..8610831 (25 bp)
TACTGACGAAGTCCCTTGGTCGAGT
LOC_Os02g15400
Os.54735.1.S1_at--51--6811Chr02:8610863..8610887 (25 bp)
GTTTCGGAAGTAAGTCGCGGGCACA
LOC_Os02g15400
Os.54735.1.S1_at--695--4951Chr02:8610909..8610933 (25 bp)
GCATATTACGTTAACCTTGTGCCTG
LOC_Os02g15400
Os.54735.1.S1_at--977--3892Chr02:8611008..8611032 (25 bp)
CTGGGCTCGCTCTAGTCAGAGTTGA
LOC_Os02g15400
Os.54735.1.S1_at--840--6051Chr02:8611026..8611050 (25 bp)
GAGTTGAGCGCGTCTATAGGCCTGA
LOC_Os02g15400
Os.54735.1.S1_at--770--3813Chr02:8611055..8611078 (24 bp)
CTGCGAGTTCACGTCGAGGCGGTAA
LOC_Os02g15400
Os.54735.1.S1_at--243--2991Chr02:8611077..8611101 (25 bp)
AATGTGAGAGTCTCTCGCTGCACGA
LOC_Os02g15400
Os.54735.1.S1_at--128--7531Chr02:8611136..8611160 (25 bp)
GTGGAGCGAGTAATCCGGCCAATTT
LOC_Os02g15400
Os.54735.1.S1_at--13--6792Chr02:8611161..8611185 (25 bp)
GTTAGGCCGTAGTGTGCATTTTCCC
LOC_Os02g15400
Target Sequence 
AAATCCGGTGTTTCATGACTGCAGCAAACACATAGCTACTCGGTATCATTATATCCGGGAGTGTGTGGAAGAAGGGCGAG
TTCAGTTGGAATTCACTGGGACTGCAGATCAAGTCGCTGATATACTGACGAAGTCCCTTGGTCGAGTGCGGTTTGAGGAG
CTACGCTCGCGGATCGGGGTTTCGGAAGTAAGTCGCGGGCACAAGGTTTAGGGGGAGATTTGTTGCATATTACGTTAACC
TTGTGCCTGCAAAAGCTGTTTTATTTAGTTAGGATAGTTTCCTTTCATGCACGTTATGTGTTTGTTTTTTATTCCCTGTT
TTTCTGGGCTCGCTCTAGTCAGAGTTGAGCGCGTCTATAGGCCTGAGGCCTGCGAGTTCACGTCGAGGCGGTAATGTGAG
AGTCTCTCGCTGCACGATCTGACGAGTGGGATGGCGCTCGTAATCCGGATGGTGGAGCGAGTAATCCGGCCAATTTGTTA
GGCCGTAGTGTGCATTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis