Browse Element(s) Details


Os.4184.1.S1_at

Description gb:AB028131.1
DB_XREF= gi:4996643
TID=Os.4184.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4184 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for Dof zinc finger protein, complete cds.
PROD=Dof zinc finger protein
FL= gb:AB028131.1 gb:AK107294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1535011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15320NANA2+8565851..8569181transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15330Os.47463.1.S1_x_at6/112+8571791..8575489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15330Os.14491.2.S1_x_at5/112+8571791..8575489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15340Os.51831.1.S1_at11/112+8582542..8584531No apical meristem protein, expressed
LOC_Os02g15350Os.4184.1.S1_at11/112+8590288..8593763Dof domain, zinc finger family protein, expressed
LOC_Os02g15360NANA2+8599198..8601685expressed protein
LOC_Os02g15370OsAffx.2619.1.S1_at11/112+8602053..8602313hypothetical protein
LOC_Os02g15380OsAffx.12056.1.S1_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380Os.56255.1.S1_x_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380OsAffx.23361.2.S1_x_at1/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15390OsAffx.12056.2.S1_at11/112+8607257..8608177BED zinc finger family protein
LOC_Os02g15400Os.54735.1.S1_at11/112+8609564..8611240retrotransposon protein, putative, unclassified, expressed
LOC_Os02g15410OsAffx.12054.1.S1_at11/112+8612358..8612681hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009845biological_processseed germination
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4184.1.S1_at--295--9891Chr02:8590740..8590764 (25 bp)
TACTTCTACGGCTGGAACAGCGCCG
LOC_Os02g15350
Os.4184.1.S1_at--1136--3591Chr02:8590627..8590651 (25 bp)
CTCGGCCATGATGTAAGCTCAATCA
LOC_Os02g15350
Os.4184.1.S1_at--867--1571Chr02:8590612..8590636 (25 bp)
AGCTCAATCAAATCAACCATGCCAA
LOC_Os02g15350
Os.4184.1.S1_at--1122--5251Chr02:8590544..8590568 (25 bp)
GAATGATTTTTCTTCAGCTTCATCG
LOC_Os02g15350
Os.4184.1.S1_at--1068--1531Chr02:8590529..8590553 (25 bp)
AGCTTCATCGATCGCTTTAGTTCGT
LOC_Os02g15350
Os.4184.1.S1_at--864--10031Chr02:8590512..8590536 (25 bp)
TAGTTCGTTTTTTATCCGTGGATCA
LOC_Os02g15350
Os.4184.1.S1_at--714--4251Chr02:8590497..8590521 (25 bp)
CCGTGGATCAAATTAGTTCGCTCTT
LOC_Os02g15350
Os.4184.1.S1_at--51--6711Chr02:8590482..8590506 (25 bp)
GTTCGCTCTTTGGAAAAATTCGTCG
LOC_Os02g15350
Os.4184.1.S1_at--769--491Chr02:8590413..8590437 (25 bp)
ATCGTCGCTCGTTTACCTGTAATTA
LOC_Os02g15350
Os.4184.1.S1_at--205--10471Chr02:8590401..8590425 (25 bp)
TTACCTGTAATTAGCTTGGAGTTGG
LOC_Os02g15350
Os.4184.1.S1_at--759--5171Chr02:8590349..8590373 (25 bp)
TGCAAAAGGTTCTCATGTTTAAGGG
LOC_Os02g15350
Target Sequence 
TACTTCTACGGCTGGAACAGCGCCGCNGGCGGCGTCGTCGCTGGAGGCGGCATCGGCGGCAACGCCGCCGCTGCCACCGG
AGCAACGCCATGGCAGGGCCTCATCGACAGCAGCTCGGCCATGATGTAAGCTCAATCAAATCAACCATGCCAAGGTTGGA
GAGAGATCTCATCCAGAAGTTGTTGCTAGCTTCTTGGAATGATTTTTCTTCAGCTTCATCGATCGCTTTAGTTCGTTTTT
TATCCGTGGATCAAATTAGTTCGCTCTTTGGAAAAATTCGTCGAAACAGTTTTAAATTTTGCTAGACAAATGAATGTCGT
CGTCGTCATCGTCGCTCGTTTACCTGTAATTAGCTTGGAGTTGGGGTTGTTTGATTGACCTCATGGAACCATGCAAAAGG
TTCTCATGTTTAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis