Browse Element(s) Details


Os.51831.1.S1_at

Description gb:AK063943.1
DB_XREF= gi:32973961
TID=Os.51831.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E07, full insert sequence.
FL= gb:AK063943.1 gb:AK101280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1534011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15310Os.25625.1.S1_at10/112+8553872..8558161RNA recognition motif family protein, expressed
LOC_Os02g15320NANA2+8565851..8569181transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15330Os.47463.1.S1_x_at6/112+8571791..8575489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15330Os.14491.2.S1_x_at5/112+8571791..8575489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15340Os.51831.1.S1_at11/112+8582542..8584531No apical meristem protein, expressed
LOC_Os02g15350Os.4184.1.S1_at11/112+8590288..8593763Dof domain, zinc finger family protein, expressed
LOC_Os02g15360NANA2+8599198..8601685expressed protein
LOC_Os02g15370OsAffx.2619.1.S1_at11/112+8602053..8602313hypothetical protein
LOC_Os02g15380OsAffx.12056.1.S1_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380Os.56255.1.S1_x_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380OsAffx.23361.2.S1_x_at1/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15390OsAffx.12056.2.S1_at11/112+8607257..8608177BED zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51831.1.S1_at--596--2091Chr02:8584037..8584061 (25 bp)
ACATCCGGTGGCGAGATGCTGCTGA
LOC_Os02g15340
Os.51831.1.S1_at--441--4091Chr02:8584105..8584129 (25 bp)
CGACTGGTCGATCCTTGACAAGCTC
LOC_Os02g15340
Os.51831.1.S1_at--753--7211Chr02:8584222..8584246 (25 bp)
GTCGTTGCAGAGGTTGCCGTTCCAC
LOC_Os02g15340
Os.51831.1.S1_at--49--151Chr02:8584248..8584272 (25 bp)
ATTACCTCGGGTTGGAAGCTGCAGA
LOC_Os02g15340
Os.51831.1.S1_at--441--6431Chr02:8584271..8584295 (25 bp)
GATCTTCTCAAGTTTTCTATGTAGA
LOC_Os02g15340
Os.51831.1.S1_at--813--751Chr02:8584310..8584334 (25 bp)
ATGTAATGTAGTATCTGCTTCTTGA
LOC_Os02g15340
Os.51831.1.S1_at--388--10492Chr02:8584339..8584363 (25 bp)
TTAAGCAGGCGAATTCTTGTTTTTT
LOC_Os02g15340
Os.51831.1.S1_at--390--10091Chr02:8584419..8584443 (25 bp)
TATCGGAGTTCTGCTAGCTACTGGC
LOC_Os02g15340
Os.51831.1.S1_at--351--1571Chr02:8584434..8584458 (25 bp)
AGCTACTGGCCTACTGTTCTATAAG
LOC_Os02g15340
Os.51831.1.S1_at--303--2151Chr02:8584468..8584492 (25 bp)
ACAGACAGTCTGAATGCCGTATGAA
LOC_Os02g15340
Os.51831.1.S1_at--1055--5251Chr02:8584479..8584503 (25 bp)
GAATGCCGTATGAACTTCTTTCTAA
LOC_Os02g15340
Target Sequence 
ACATCCGGTGGCGAGATGCTGCTGATGAGCGGCGGCGGCGTCGACGGCGGCCGCTTCGGCGCCGCCGCCGACTGGTCGAT
CCTTGACAAGCTCCTGGCGTCGCACCAGAACCTCGACCAGCTCTTCCATGGCAAGGTCGCCGGAGCGCATCAGCAGCAGC
AGCAGATGGCCATGGACGCCGCCTCGTCGTTGCAGAGGTTGCCGTTCCACCATTACCTCGGGTTGGAAGCTGCAGATCTT
CTCAAGTTTTCTATGTAGAAATTTTTTAGCTATATGTAATGTAGTATCTGCTTCTTGATTAATTAAGCAGGCGAATTCTT
GTTTTTTTTTCTCTTCTAGTTTTGTCAAATTATTAGTACTAGTTTCAGTTTGATAAGGTTAATATCGGAGTTCTGCTAGC
TACTGGCCTACTGTTCTATAAGCATGTGTATACAGACAGTCTGAATGCCGTATGAACTTCTTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis