Browse Element(s) Details


OsAffx.12054.1.S1_at

Description tigr:9630.m01443
TID=OsAffx.12054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15350Os.4184.1.S1_at11/112+8590288..8593763Dof domain, zinc finger family protein, expressed
LOC_Os02g15360NANA2+8599198..8601685expressed protein
LOC_Os02g15370OsAffx.2619.1.S1_at11/112+8602053..8602313hypothetical protein
LOC_Os02g15380OsAffx.12056.1.S1_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380Os.56255.1.S1_x_at2/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15380OsAffx.23361.2.S1_x_at1/112+8603933..8605922hAT family dimerisation domain containing protein
LOC_Os02g15390OsAffx.12056.2.S1_at11/112+8607257..8608177BED zinc finger family protein
LOC_Os02g15400Os.54735.1.S1_at11/112+8609564..8611240retrotransposon protein, putative, unclassified, expressed
LOC_Os02g15410OsAffx.12054.1.S1_at11/112+8612358..8612681hypothetical protein
LOC_Os02g15420OsAffx.20313.1.S1_x_at6/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.18764.1.S1_at1/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.6537.1.S1_at1/112+8626224..8628544hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12054.1.S1_at--1045--6311Chr02:8612627..8612651 (25 bp)
GATGAACCTGCGAGGGCCGCTCTGA
LOC_Os02g15410
OsAffx.12054.1.S1_at--1035--4111Chr02:8612610..8612634 (25 bp)
CGCTCTGATAGATTCTGAAACGGCA
LOC_Os02g15410
OsAffx.12054.1.S1_at--919--5031Chr02:8612588..8612612 (25 bp)
GCAGAGGAGGCGTTAGTGCCACCTT
LOC_Os02g15410
OsAffx.12054.1.S1_at--958--7653Chr02:7891941..7891965 (25 bp)
GGGATCCGTTCAGGCAATCGATCAA
NONE
OsAffx.12054.1.S1_at--514--4891Chr02:8612520..8612544 (25 bp)
GCTTCAGTTCGGTGGCAGGATTGAT
LOC_Os02g15410
OsAffx.12054.1.S1_at--98--6591Chr02:8612502..8612526 (25 bp)
GATTGATCACAACAGGCGCCTAATG
LOC_Os02g15410
OsAffx.12054.1.S1_at--592--4551Chr02:8612487..8612511 (25 bp)
GCGCCTAATGAGCAAGAGTTCCCCA
LOC_Os02g15410
OsAffx.12054.1.S1_at--432--1352Chr08:14028205..14028229 (25 bp)
AGAGTTCCCCAAAGCAGTGCCGGCT
NONE
OsAffx.12054.1.S1_at--95--6173Chr02:7892040..7892064 (25 bp)
GAGGATCAGCGGAATCAGTCACACT
NONE
OsAffx.12054.1.S1_at--935--1951Chr02:8612417..8612441 (25 bp)
ACTGGATCCACTAGTGTCCGGCGAC
LOC_Os02g15410
OsAffx.12054.1.S1_at--608--5891Chr02:8612388..8612412 (25 bp)
GAGCTGGTCGTGGAGTAACATTTGC
LOC_Os02g15410
Target Sequence 
GATGAACCTGCGAGGGCCGCTCTGATAGATTCTGAAACGGCAGAGGAGGCGTTAGTGCCACCTTGGGGATCCGTTCAGGC
AATCGATCAAAGGCAGTGGGATGGTCGGCTTCAGTTCGGTGGCAGGATTGATCACAACAGGCGCCTAATGAGCAAGAGTT
CCCCAAAGCAGTGCCGGCTGGCGAATGGGAGGATCAGCGGAATCAGTCACACTGGATCCACTAGTGTCCGGCGACCGGTG
AGCTGGTCGTGGAGTAACATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis