Browse Element(s) Details


Os.27522.2.S1_at

Description gb:AK067446.1
DB_XREF= gi:32977464
TID=Os.27522.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0094F01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106A12, full insert sequence.
FL= gb:AK067446.1 gb:AK104412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g583309/11Lipoamide dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58320NANA3+33165663..33167330Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58330Os.27522.1.S1_x_at11/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58330Os.27522.2.S1_at9/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58340Os.13625.1.S1_at10/113+33179257..33183312expressed protein
LOC_Os03g58350Os.26512.1.S1_at11/113+33184945..33186252AUX/IAA family protein, expressed
LOC_Os03g58364NANA3+33191354..33192260hypothetical protein
LOC_Os03g58380Os.23341.1.S1_at11/113+33198209..33199182aldehyde oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27522.2.S1_at--361--7111Chr03:33175862..33175886 (25 bp)
GTCACCTTTCGTTATCATCTTTTGT
LOC_Os03g58330
Os.27522.2.S1_at--1039--2331Chr03:33175987..33176011 (25 bp)
AAAGAGTCTGGCATGCTCTCACATT
LOC_Os03g58330
Os.27522.2.S1_at--162--9531Chr03:33176003..33176027 (25 bp)
TCTCACATTGTCTCTTTTCGAGTCT
LOC_Os03g58330
Os.27522.2.S1_at--702--10291Chr03:33176018..33176042 (25 bp)
TTTCGAGTCTGTAGTGCACCAACCA
LOC_Os03g58330
Os.27522.2.S1_at--841--51Chr03:33176101..33176125 (25 bp)
ATTGATGTATGCCTGTGTCTGCAGC
LOC_Os03g58330
Os.27522.2.S1_at--1036--5071Chr03:33176121..33176145 (25 bp)
GCAGCCTGCACAATGGTTGACGGAA
LOC_Os03g58330
Os.27522.2.S1_at--605--8791Chr03:33176186..33176210 (25 bp)
TGTTCATTTATCTCCATTTTTCCAA
LOC_Os03g58330
Os.27522.2.S1_at--961--9791Chr03:33176253..33176277 (25 bp)
TAAGCTGATCGCTAGTGGGTCTGCT
LOC_Os03g58330
Os.27522.2.S1_at--560--8631Chr03:33176268..33176292 (25 bp)
TGGGTCTGCTATCTACATCTACATG
LOC_Os03g58330
Os.27522.2.S1_at--1152--6871Chr03:33176387..33176411 (25 bp)
GTATTTTCTGCCATGAGTTCTCAAC
NONE
Os.27522.2.S1_at--830--1211Chr03:33176402..33176426 (25 bp)
AGTTCTCAACTACCCACATTATTTG
NONE
Target Sequence 
GTCACCTTTCGTTATCATCTTTTGTTCAAAGGTGCTTTGATTGCAAGGATATGGTAAGCAATAGCCTGCTCATCCTCCTA
CACCTTTCAATGCCCCTATGAGCGCGGGTGATTGAGAGAGCTACTAAAGAGTCTGGCATGCTCTCACATTGTCTCTTTTC
GAGTCTGTAGTGCACCAACCATACACTTTGTGGTGGGGACTGCTTTTTTGGTAGTGGGTGTTTGGACTAATCAAAAGGGA
TTGATGTATGCCTGTGTCTGCAGCCTGCACAATGGTTGACGGAATTTGAACACAAGATGAAATGGAAGATGATTTTGATG
GTGATGTTCATTTATCTCCATTTTTCCAAAGTGGAGGCGGAGGCTTTGGTCAATGGAGGCTGAGCGTGCGCTAAGCTGAT
CGCTAGTGGGTCTGCTATCTACATCTACATGCACTACTGTTGTANNNNNNNNNNNNNNCTCTTGATAAGAAACTGCGGTA
NAANGTTTAATCTTTCTATTGGCGATTAATCCATAGAATTACTTTGTATTTTCTGCCATGAGTTCTCAACTACCCACATT
ATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27522.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis