Browse Element(s) Details


Os.26512.1.S1_at

Description gb:AK059619.1
DB_XREF= gi:32969637
TID=Os.26512.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative auxin-induced protein (OSJNBa0094F01.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G11, full insert sequence.
FL= gb:AK059619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5835011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58320NANA3+33165663..33167330Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58330Os.27522.1.S1_x_at11/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58330Os.27522.2.S1_at9/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58340Os.13625.1.S1_at10/113+33179257..33183312expressed protein
LOC_Os03g58350Os.26512.1.S1_at11/113+33184945..33186252AUX/IAA family protein, expressed
LOC_Os03g58364NANA3+33191354..33192260hypothetical protein
LOC_Os03g58380Os.23341.1.S1_at11/113+33198209..33199182aldehyde oxidase, putative, expressed
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26512.1.S1_at--92--5411Chr03:33185433..33185457 (25 bp)
GAAGCTGCGGATAATGCGAGGATCT
LOC_Os03g58350
Os.26512.1.S1_at--241--10131Chr03:33185392..33185416 (25 bp)
TATCGAAATCGAAAGGCGTCGAGCT
LOC_Os03g58350
Os.26512.1.S1_at--599--1411Chr03:33185365..33185389 (25 bp)
AGAAAAAATTTTCGCCGATGCATGC
LOC_Os03g58350
Os.26512.1.S1_at--427--651Chr03:33185344..33185368 (25 bp)
ATGCATGGAGTAGACATCTCACAGA
LOC_Os03g58350
Os.26512.1.S1_at--658--1351Chr03:33185299..33185323 (25 bp)
AGAGATGAGATCTATCCGTGGACAT
LOC_Os03g58350
Os.26512.1.S1_at--753--3991Chr03:33185283..33185307 (25 bp)
CGTGGACATCGTCATGCATGGCGAT
LOC_Os03g58350
Os.26512.1.S1_at--364--6511Chr03:33185186..33185210 (25 bp)
GATATCCAAGGATCTGAATTCTAAA
LOC_Os03g58350
Os.26512.1.S1_at--724--10531Chr03:33185157..33185181 (25 bp)
TTCAGGATTCAGTTGGATCGGAGTT
LOC_Os03g58350
Os.26512.1.S1_at--444--7951Chr03:33185121..33185145 (25 bp)
GGATATGATCGATCGAGCAGAGCTG
LOC_Os03g58350
Os.26512.1.S1_at--1135--1511Chr03:33185106..33185130 (25 bp)
AGCAGAGCTGCAGTACTCCTATGTA
LOC_Os03g58350
Os.26512.1.S1_at--482--1231Chr03:33185035..33185059 (25 bp)
AGTTCTGCAGATTTGTGTACACATG
LOC_Os03g58350
Target Sequence 
GAAGCTGCGGATAATGCGAGGATCTGAGGCGAGATGATATATATCGAAATCGAAAGGCGTCGAGCTGAAGAAAAAATTTT
CGCCGATGCATGCATGGAGTAGACATCTCACAGAAAAAAGGCTTCATGCATGAGAGAGATGAGATCTATCCGTGGACATC
GTCATGCATGGCGATNCGGACGGCTGGCCAAGAAGGACACTTACACGTNGATGCATCTTGTTTTTGTTCTACGTAGATGT
GTAGATGAGATATCCAAGGATCTGAATTCTAAAAAAGTTCAGGATTCAGTTGGATCGGAGTTGGTGAGGAGGAGGATATG
ATCGATCGAGCAGAGCTGCAGTACTCCTATGTACAGAATAATCTAGCTGAGATTTTGGNNTTGTTGGNAATGGNNACTGC
TAGTTCTGCAGATTTGTGTACACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis