Browse Element(s) Details


Os.23341.1.S1_at

Description gb:CB096967
DB_XREF= gi:27921159
DB_XREF=AF53-Rpf_10_H18_T7_075.ab1
CLONE=C0003642
TID=Os.23341.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.23341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0094F01.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5838011/11aldehyde oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58330Os.27522.1.S1_x_at11/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58330Os.27522.2.S1_at9/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58340Os.13625.1.S1_at10/113+33179257..33183312expressed protein
LOC_Os03g58350Os.26512.1.S1_at11/113+33184945..33186252AUX/IAA family protein, expressed
LOC_Os03g58364NANA3+33191354..33192260hypothetical protein
LOC_Os03g58380Os.23341.1.S1_at11/113+33198209..33199182aldehyde oxidase, putative, expressed
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23341.1.S1_at--446--8851Chr03:33199044..33199068 (25 bp)
TGATCTCGACAAGGTCCATGTCATC
LOC_Os03g58380
Os.23341.1.S1_at--1049--4731Chr03:33198640..33198664 (25 bp)
GCTGACGGAGCATACGTACTGGACC
LOC_Os03g58380
Os.23341.1.S1_at--310--9891Chr03:33198594..33198618 (25 bp)
TACTTGAACTATGGACCTGCGGTTA
LOC_Os03g58380
Os.23341.1.S1_at--903--8051Chr03:33198411..33198435 (25 bp)
GGAGCGACCTCATCTTAAAGACCTA
LOC_Os03g58380
Os.23341.1.S1_at--504--5011Chr03:33198384..33198408 (25 bp)
GCAGGCTCATCTTAAAGACCTAATG
LOC_Os03g58380
Os.23341.1.S1_at--98--6431Chr03:33198349..33198373 (25 bp)
GATCTTGCATCTTATTGGGCGACGT
LOC_Os03g58380
Os.23341.1.S1_at--841--5751Chr03:33198329..33198353 (25 bp)
GACGTGGCGCCATAGAAATCAGCAA
LOC_Os03g58380
Os.23341.1.S1_at--1089--10011Chr03:33198317..33198341 (25 bp)
TAGAAATCAGCAAAAGTCCCCTCCC
LOC_Os03g58380
Os.23341.1.S1_at--501--3111Chr03:33198292..33198316 (25 bp)
AATATCTGCCATGTGTCCACTCCGA
LOC_Os03g58380
Os.23341.1.S1_at--1136--7251Chr03:33198278..33198302 (25 bp)
GTCCACTCCGAGGAGATGCTCCAAT
LOC_Os03g58380
Os.23341.1.S1_at--118--6351Chr03:33198264..33198288 (25 bp)
GATGCTCCAATGTACTATATCTATG
LOC_Os03g58380
Target Sequence 
TGATCTCGACAAGGTCCATGTCATCCTCATCCAGGCTGACACACTGAGCATGATCCATCAAGGAGAAGGCTGGTACCCTA
CCATGGAAATCCTTGATTGCCCAGGCAAGCATGGCGAGTGTGAAGCTGACGGAGCATACGTACTGGACCCCTGACCNGAC
GTTCCCTAGCTACTTGAACTATGGACCTGCGGTTAGTGAGGTGGAAGTGGATATGCTGACAGGAGCAACCACCATCCTAA
GGAGCGACCTCATCTTAAAGACCTAANGCAGGCTCATCTTAAAGACCTAATGCAGNGTCCAAGATCTTGCATCTTATTGG
GCGACGTGGCGCCATAGAAATCAGCAAAAGTCCCCTCCCAATATCTGCCATGTGTCCACTCCGAGGAGATGCTCCAATGT
ACTATATCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis