Browse Element(s) Details


Os.30977.1.S1_at

Description gb:AK108034.1
DB_XREF= gi:32993243
TID=Os.30977.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA (cytosine-5-)-methyltransferase (OSJNBa0094F01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C03, full insert sequence.
FL= gb:AK108034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5840011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58380Os.23341.1.S1_at11/113+33198209..33199182aldehyde oxidase, putative, expressed
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0009910biological_processnegative regulation of flower development
GO:0003677molecular_functionDNA binding
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30977.1.S1_at--1010--1291Chr03:33219062..33219086 (25 bp)
AGATGCAAGCACATTCCAAAGCGCC
LOC_Os03g58400
Os.30977.1.S1_at--823--2351Chr03:33219079..33219103 (25 bp)
AAAGCGCCCAGGTTGCGACTGGCAT
LOC_Os03g58400
Os.30977.1.S1_at--878--7591Chr03:33219235..33219259 (25 bp)
GGGCAGATGGTGGACTTGATCCCTT
LOC_Os03g58400
Os.30977.1.S1_at--978--7311Chr03:33219261..33219285 (25 bp)
GTGCTTGCCCAACACAGCCAAAAGG
LOC_Os03g58400
Os.30977.1.S1_at--356--3151Chr03:33219330..33219354 (25 bp)
CAATTTCCCCACTTCTGTAACGGAT
LOC_Os03g58400
Os.30977.1.S1_at--1114--3871Chr03:33219344..33219368 (25 bp)
CTGTAACGGATCCTCAGCCAATGGG
LOC_Os03g58400
Os.30977.1.S1_at--744--771Chr03:33219379..33219403 (25 bp)
ATGTGCTTCCATCCTGAGCAGGACA
LOC_Os03g58400
Os.30977.1.S1_at--284--151Chr03:33219409..33219433 (25 bp)
ATTACTGTCCGTGAATGTGCTCGAT
LOC_Os03g58400
Os.30977.1.S1_at--475--4051Chr03:33219837..33219861 (25 bp)
CGATAGCTACCGTTTCGCTGGCAAC
LOC_Os03g58400
Os.30977.1.S1_at--1022--7531Chr03:33219961..33219985 (25 bp)
GTGGCTTTTAACTTCACTGCATCGC
LOC_Os03g58400
Os.30977.1.S1_at--573--4971Chr03:33219979..33220003 (25 bp)
GCATCGCCCTCATTTTTTGGTCGGT
LOC_Os03g58400
Target Sequence 
AGATGCAAGCACATTCCAAAGCGCCCAGGTTGCGACTGGCATGACCTGCCAGATGAAAAGGTGAAGCTGTCCACAGGGCA
GATGGTGGACTTGATCCCTTGGTGCTTGCCCAACACAGCCAAAAGGCACAATCAGTGGAAAGGACTGTACGGTAGGTTGG
ACTGGGAGGGCAATTTCCCCACTTCTGTAACGGATCCTCAGCCAATGGGGAAGGTCGGCATGTGCTTCCATCCTGAGCAG
GACAGGATCATTACTGTCCGTGAATGTGCTCGATCCCAGGGCTTCCCCGATAGCTACCGTTTCGCTGGCAACATCCAGAA
CAAGCACAGGCAGATCGGGAATGCCGTGCCACCGCCCCTTGCCTATGCCCTCGGGAGGAAGCTCAAGCAAGCCATCGACG
CCAAGCGTTGAGTGGCTTTTAACTTCACTGCATCGCCCTCATTTTTTGGTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis