Browse Element(s) Details


Os.12005.1.S1_at

Description gb:AK121716.1
DB_XREF= gi:37991339
TID=Os.12005.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein S15 (OSJNBa0052F07.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079G18, full insert sequence.
FL= gb:AK121716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5843011/1140S ribosomal protein S15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12005.1.S1_at--1156--8651Chr03:33230158..33230182 (25 bp)
TGTGAGGACCCACCTCAGGAACATG
LOC_Os03g58430
Os.12005.1.S1_at--288--1311Chr03:33230054..33230078 (25 bp)
AGATGATTGGCCACTACCTCGCAGA
LOC_Os03g58430
Os.12005.1.S1_at--552--9351Chr03:33230036..33230060 (25 bp)
TCGCAGAGTTCTCCATCTCGTACAA
LOC_Os03g58430
Os.12005.1.S1_at--476--9511Chr03:33230021..33230045 (25 bp)
TCTCGTACAAGCCAGTCAAGCACGG
LOC_Os03g58430
Os.12005.1.S1_at--540--1151Chr03:33230008..33230032 (25 bp)
AGTCAAGCACGGTAGGCCTGGTATT
LOC_Os03g58430
Os.12005.1.S1_at--1113--3331Chr03:33229967..33229991 (25 bp)
CACGGTTTATCCCTCTCAAGTGAGA
LOC_Os03g58430
Os.12005.1.S1_at--649--1351Chr03:33229945..33229969 (25 bp)
AGAGATCATCTGCAGCTGTTTGCGC
LOC_Os03g58430
Os.12005.1.S1_at--526--6851Chr03:33229928..33229952 (25 bp)
GTTTGCGCTTCCAGTATGTAGCTTG
LOC_Os03g58430
Os.12005.1.S1_at--960--5891Chr03:33229904..33229928 (25 bp)
GAGCTGTCGAACAAGGAACTCCAAA
LOC_Os03g58430
Os.12005.1.S1_at--604--5851Chr03:33229854..33229878 (25 bp)
GAGCAGCCACTTTTTGAACCTTGGT
LOC_Os03g58430
Os.12005.1.S1_at--5--7731Chr03:33229719..33229743 (25 bp)
GGTGTTAACCTACCTATGGCATGAA
LOC_Os03g58430
Target Sequence 
TGTGAGGACCCACCTCAGGAACATGATCATTGTGCCTGAGATGATCGGAAGCATCGTCGGTGTCTACAACGGCAAGACCT
TCAACCAGGTTGAGATCAAGCCTGAGATGATTGGCCACTACCTCGCAGAGTTCTCCATCTCGTACAAGCCAGTCAAGCAC
GGTAGGCCTGGTATTGGTGCTACCCACTCCTCACGGTTTATCCCTCTCAAGTGAGAGATCATCTGCAGCTGTTTGCGCTT
CCAGTATGTAGCTTGAGCTGTCGAACAAGGAACTCCAAAGTACTTTATTAATNGCGTGTCCACCGAGCAGCCACTTTTTG
AACCTTGGTTAATCTGATGTTATTTCCCCAGATATTTTGAAGTTATATCCAAACATGTTATTTCTATTGCAATTATCATC
CGTTGAACNGAACCAGTGTTNTGTCATCCCTGATGATGAGGTGTTAACCTACCTATGGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis