Browse Element(s) Details


Os.19503.1.S1_at

Description gb:AK067976.1
DB_XREF= gi:32977994
TID=Os.19503.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0052F07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128O10, full insert sequence.
FL= gb:AK067976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5849011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19503.1.S1_at--359--6411Chr03:33257725..33257749 (25 bp)
GATCTCTGAACTCACTGCAAAGCTG
LOC_Os03g58490
Os.19503.1.S1_at--992--9991Chr03:33257770..33257794 (25 bp)
TAGCTTCCTAGAGCACAGCATAAAC
LOC_Os03g58490
Os.19503.1.S1_at--341--2911Chr03:33257819..33257843 (25 bp)
AAGGAGCTGATCCATGGCATCGCTT
LOC_Os03g58490
Os.19503.1.S1_at--68--8511Chr03:33257833..33257857 (25 bp)
TGGCATCGCTTGCAGCCTCAGAGAG
LOC_Os03g58490
Os.19503.1.S1_at--858--5071Chr03:33257844..33257868 (25 bp)
GCAGCCTCAGAGAGCTCCGGAAGAT
LOC_Os03g58490
Os.19503.1.S1_at--988--5391Chr03:33257899..33257923 (25 bp)
GAAGCTTCATCAGAGGATACACGTT
LOC_Os03g58490
Os.19503.1.S1_at--781--4771Chr03:33258356..33258380 (25 bp)
GCTGCTGACTGTATATGTGCTAATG
LOC_Os03g58490
Os.19503.1.S1_at--23--791Chr03:33258378..33258402 (25 bp)
ATGTGCATGTGCACACGGCGGTTGC
LOC_Os03g58490
Os.19503.1.S1_at--243--9351Chr03:33258458..33258482 (25 bp)
TCGCGTGGAGTGTTCCTTGTACAAA
LOC_Os03g58490
Os.19503.1.S1_at--561--10391Chr03:33258496..33258520 (25 bp)
TTTTGAGTGCTCAGAATTGACCAAT
LOC_Os03g58490
Os.19503.1.S1_at--893--251Chr03:33258519..33258543 (25 bp)
ATATGCATACACACCTTTTCTCAGT
LOC_Os03g58490
Target Sequence 
GATCTCTGAACTCACTGCAAAGCTGAAGGCACTGGAANNAGATCNTAGCTTCCTAGAGCACAGCATAAACTCGCTGAGAA
ATGGCCAAGAAGGCAAGGAGCTGATCCATGGCATCGCTTGCAGCCTCAGAGAGCTCCGGAAGATGGGGATCACTTGGAAG
GATTGTGATTAGCTGAAGCTTCATCAGAGGATACACGTTTGACAGAGNNNNNNNNNNNNNNNNNNGATGTAAACTGTAAA
GAGTGATGGATTAAGCTGCTGACTGTATATGTGCTAATGTGCATGTGCACACGGCGGTTGCTGTCATGTCATGCGGTGGT
GGTAGGTTTTGGGCCGTTGCAAGTGCGCCGTGCTCTTCGCGTGGAGTGTTCCTTGTACAAATNCAGTGTGGATTTTTTGA
GTGCTCAGAATTGACCAATATGCATACACACCTTTTCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis