Browse Element(s) Details


OsAffx.25754.1.S1_at

Description tigr:9631.m05754
TID=OsAffx.25754.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g585102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25754.1.S1_at--49--5751Chr03:33263136..33263160 (25 bp)
GACGGCGCGGGCTTCATCCTCTACG
LOC_Os03g58510
OsAffx.25754.1.S1_at--975--3971Chr03:33263129..33263153 (25 bp)
CGGGCTTCATCCTCTACGGCGTCGA
LOC_Os03g58510
OsAffx.25754.1.S1_at--685--571Chr03:33261986..33262010 (25 bp)
ATCCATTGCCGTCGTCTGGAGGCCT
NONE
OsAffx.25754.1.S1_at--320--9251Chr03:33261870..33261894 (25 bp)
TCCTACCTCGTGCATATTTTGCTGG
NONE
OsAffx.25754.1.S1_at--975--1751Chr03:33261866..33261890 (25 bp)
ACCTCGTGCATATTTTGCTGGCGGG
NONE
OsAffx.25754.1.S1_at--677--5891Chr03:33261704..33261728 (25 bp)
GAGCGGATCCGCGTGATGCATCCCG
NONE
OsAffx.25754.1.S1_at--922--7971Chr03:33261700..33261724 (25 bp)
GGATCCGCGTGATGCATCCCGCCGG
NONE
OsAffx.25754.1.S1_at--389--471Chr03:33261666..33261690 (25 bp)
ATCTCCGCTCGACGTTCGCTGTTGT
NONE
OsAffx.25754.1.S1_at--315--9371Chr03:33261658..33261682 (25 bp)
TCGACGTTCGCTGTTGTTCGCGGGC
NONE
OsAffx.25754.1.S1_at--171--1731Chr03:33261655..33261679 (25 bp)
ACGTTCGCTGTTGTTCGCGGGCCCG
NONE
OsAffx.25754.1.S1_at--423--10711Chr03:33261529..33261553 (25 bp)
TTGCGCGCACGCAAGTCGTCGTCGC
NONE
Target Sequence 
GACGGCGCGGGCTTCATCCTCTACGGCGTCGAGCGCGCGGCGTCTCCATCGCCAGCCGCCGCCGCCGTCGTCTGCACCGT
CGCCATCCATTGCCGTCGTCTGGAGGCCTCCGGTTCCACCCGACCTCGACTCGGGGGGAGGGGGGATTCGGGCAGCACGG
CGTGGATTCGGGAGGAGGGGGCGACCTCCGCCGCGCGGCCTCCTACCTCGTGCATATTTTGCTGGCGGGGTGGATTCTGG
GGCAGCGGCGGCCTCCGCTGCCTCTGCCTATGCCTCCCGGGGCCGCCGTCGTCGTTGCCATTTGCCGCCGCCACCATCGC
CATCGTTTGCGGGGGAGAGGGCCCGACGGCAAGGGAGGCCGGTGAGGAGCGGATCCGCGTGATGCATCCCGCCGGCTCGG
TGCCATCTCCGCTCGACGTTCGCTGTTGTTCGCGGGCCCGCCTCACGTGCCCGCCGTCGCCTTGGGCTCCCACGAGGCGT
CGCTGCCGTTCGCCATCGCCTCACGCGCACGCGAGTCGCCGTCGCCTCGCCCGCCCGCGCCTTGCGCGCACGCAAGTCGT
CGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis