Browse Element(s) Details


Os.7181.1.S1_at

Description gb:AK072569.1
DB_XREF= gi:32982592
TID=Os.7181.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-binding protein (OSJNBa0052F07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128J04, full insert sequence.
FL= gb:AK072569.1 gb:AK104450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5853011/11ES43, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009791biological_processpost-embryonic development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0042156molecular_functionzinc-mediated transcriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7181.1.S1_at--364--8891Chr03:33270849..33271179 (25 bp)
TGAGGATTGCTCTGACTGGTTTCAT
LOC_Os03g58530
Os.7181.1.S1_at--458--7871Chr03:33271362..33271386 (25 bp)
GGTTTCATCCTTCCTGTGTTGAAAT
LOC_Os03g58530
Os.7181.1.S1_at--437--2871Chr03:33271782..33271805 (24 bp)
AAGGTGCAGTCCAAACGACGGCGGA
LOC_Os03g58530
Os.7181.1.S1_at--399--5651Chr03:33271820..33271844 (25 bp)
GACAGAATCTCAATACCTCCAAAGT
LOC_Os03g58530
Os.7181.1.S1_at--98--1731Chr03:33271957..33271981 (25 bp)
ACCAGTGTTTTCTTTTTGCATCGTT
LOC_Os03g58530
Os.7181.1.S1_at--545--511Chr03:33271976..33272000 (25 bp)
ATCGTTTGCATGGTCGTCGTAGCGT
LOC_Os03g58530
Os.7181.1.S1_at--389--4651Chr03:33271997..33272021 (25 bp)
GCGTCGTCGCATGTACTAGCTTGGA
LOC_Os03g58530
Os.7181.1.S1_at--622--3711Chr03:33272012..33272036 (25 bp)
CTAGCTTGGAGTCAGTCAGTCAGTT
LOC_Os03g58530
Os.7181.1.S1_at--646--6451Chr03:33272051..33272075 (25 bp)
GATCAAACTCCCTCTTGGTCATAAA
LOC_Os03g58530
Os.7181.1.S1_at--62--331Chr03:33272096..33272120 (25 bp)
ATGAAACTGGGCACTACCTACCGTG
LOC_Os03g58530
Os.7181.1.S1_at--893--9951Chr03:33272110..33272134 (25 bp)
TACCTACCGTGGTTGTGTTGTTGTC
LOC_Os03g58530
Target Sequence 
TGAGGATTGCTCTGACTGGTTTCATCCTTCCTGTGTTGAAATAACCATCAAAGAAGCGAAGAAACTAGAGCATTTTTACT
GTAAAAGCTGTATTGCTGAAAATGGAAAGGATCTACAAAAGTCCAATGGTGCTACTGNGCAATCTGAAGAAAAGGTGCAG
TCCAAACGACGGCGGAGGTGATGCCATGGAGACAGAATCTCAATACCTCCAAAGTGGATGTAACAATTCTGTGGGGAGCA
AAGCCTCATCACTCCTCNAGATCTTCTCTCTTCTCTTCCTGTGCAAGGCTGCTTGCAGCCAGTGACCAGTGTACTGTGTA
CATATTTACCAGTGTTTTCTTTTTGCATCGTTTGCATGGTCGTCGTAGCGTCGTCGCATGTACTAGCTTGGAGTCAGTCA
GTCAGTTAGCTCGAGCAAAGGGATCAAACTCCCTCTTGGTCATAAACTCATAAGCGATGATGATAGATGAAACTGGGCAC
TACCTACCGTGGTTGTGTTGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis