Browse Element(s) Details


Os.9245.1.S1_at

Description gb:AK102772.1
DB_XREF= gi:32987981
TID=Os.9245.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0052F07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107G17, full insert sequence.
FL= gb:AK102772.1 gb:AK058959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5848011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010015biological_processroot morphogenesis
GO:0010031biological_processcircumnutation
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9245.1.S1_at--373--1471Chr03:33252915..33252939 (25 bp)
AGAAGGACCTCCTCCAAAGGCTGAA
LOC_Os03g58480
Os.9245.1.S1_at--701--1751Chr03:33253330..33253354 (25 bp)
ACTCGTGCTAAATCACCAAAGTTTA
LOC_Os03g58480
Os.9245.1.S1_at--715--971Chr03:33253363..33253387 (25 bp)
AGGAGCTGCAGTGATGCACCGCCGA
LOC_Os03g58480
Os.9245.1.S1_at--940--4111Chr03:33253410..33253434 (25 bp)
CGCAGCATCTAGTCGATCACATCGT
LOC_Os03g58480
Os.9245.1.S1_at--540--6451Chr03:33253424..33253448 (25 bp)
GATCACATCGTCACAGCATTGCGAA
LOC_Os03g58480
Os.9245.1.S1_at--1085--10671Chr03:33253442..33253466 (25 bp)
TTGCGAACCCTAAAGATGCTAACAG
LOC_Os03g58480
Os.9245.1.S1_at--760--4651Chr03:33253490..33253514 (25 bp)
GCGTCGCTGCCAAAACTAGAGCTGT
LOC_Os03g58480
Os.9245.1.S1_at--367--8751Chr03:33253576..33253600 (25 bp)
TGTACAAACCTAACTTTAGCCGTCT
LOC_Os03g58480
Os.9245.1.S1_at--34--9511Chr03:33253598..33253622 (25 bp)
TCTCTCGGTTTCATGGCATTTTGCA
LOC_Os03g58480
Os.9245.1.S1_at--928--2351Chr03:33253820..33253844 (25 bp)
AAAGCCCTTGATGAACCGTTGCAAT
LOC_Os03g58480
Os.9245.1.S1_at--323--731Chr03:33253843..33253867 (25 bp)
ATGTTTTGCTTGATATTTACCTGGG
LOC_Os03g58480
Target Sequence 
AGAAGGACCTCCTCCAAAGGCTGAACTTAAGAAGGTCCCTCCAACTCGTGCTAAATCACCAAAGTTTACAAGGAGGAGGA
GCTGCAGTGATGCACCGCCGACGCCAGAGGCAGCAAATACNACCGCAGCATCTAGTCGATCACATCGTCACAGCATTGCG
AACCCTAAAGATGCTAACAGAGTACAATGCTCACCAAAAAATNGGCGTCGCTGCCAAAACTAGAGCTGTCAAACCTGTGA
GCTGAAGGCCCTCTGGAGATTCTAGATCAGCCAAGTGTTGCGAATGTCGCTGTACAAACCTAACTTTAGCCGTCTCTCGG
TTTCATGGCATTTTGCATTTGATTTATACTTCCTGTCACCAAAAGAAGGCCACAGTGCCGAGGCCGGTGTGCTTGCAGCT
GAACCCTTTCATTTCTTTTCTTCTTTTCGCGTTGCTGTGTAAGAACTCTGTTGCTGGGACCATGTACTGTGTTCCTTGTT
GTAAATGGTCGAGGGTTTCTGTCAGAACTCAGAAGGAAGACACTCTGNCCTTTTAAAGCCCTTGATGAACCGTTGCAATG
TTTTGCTTGATATTTACCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis