Browse Element(s) Details


OsAffx.25753.1.S1_at

Description tigr:9631.m05743
TID=OsAffx.25753.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative WRKY DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5842011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25753.1.S1_at--951--5911Chr03:33226414..33226438 (25 bp)
GAGCTTTCAGTTCGAGCAGACGCCG
LOC_Os03g58420
OsAffx.25753.1.S1_at--698--1511Chr03:33226428..33226452 (25 bp)
AGCAGACGCCGATCAGCGACAAGTT
LOC_Os03g58420
OsAffx.25753.1.S1_at--451--5611Chr03:33226445..33226469 (25 bp)
GACAAGTTCCACATCGAGATGCCGA
LOC_Os03g58420
OsAffx.25753.1.S1_at--380--5311Chr03:33226492..33226516 (25 bp)
GAAGGAGGTGATCAGCTTCAGCTTC
LOC_Os03g58420
OsAffx.25753.1.S1_at--811--9651Chr03:33226509..33226533 (25 bp)
TCAGCTTCGACAACTCGGTGTGCAC
LOC_Os03g58420
OsAffx.25753.1.S1_at--525--3031Chr03:33226692..33226714 (23 bp)
AATGCCATTGCCCAAAGAAGAAGAA
LOC_Os03g58420
OsAffx.25753.1.S1_at--1152--2851Chr03:33226840..33226864 (25 bp)
AAGGTCGCCGATATACCTTCGGACA
LOC_Os03g58420
OsAffx.25753.1.S1_at--184--1751Chr03:33226854..33226878 (25 bp)
ACCTTCGGACAATTATTCTTGGAGA
LOC_Os03g58420
OsAffx.25753.1.S1_at--35--3351Chr03:33227295..33227319 (25 bp)
CACGTCGAGAGGTGTCGCAGCGACC
LOC_Os03g58420
OsAffx.25753.1.S1_at--537--3831Chr03:33227328..33227352 (25 bp)
CTGCTCGTCACCTACGAGAACGAAC
LOC_Os03g58420
OsAffx.25753.1.S1_at--218--5971Chr03:33227343..33227367 (25 bp)
GAGAACGAACACAACCACGCGCAGC
LOC_Os03g58420
Target Sequence 
GAGCTTTCAGTTCGAGCAGACGCCGATCAGCGACAAGTTCCACATCGAGATGCCGAGAGGCGTCGGCGGCGGCGGAGGGA
AGGAGGTGATCAGCTTCAGCTTCGACAACTCGGTGTGCACCTCGTCGGCGGCGACCTCCTTCTTCACCTCCATCAGCAGC
CAGCTCATCAGCATGTCCGACGCCGCCACCAACTCCGCCGCGGCTGCGGCGGCGCCGACGACCAAGAAGCCGTCGTCGTG
CGCCAGGAAGGCCACCGCCGACGACGACGCCGGCGGCAAATGCCATTGCCCAAAGAAGAAGAAACCCAGGGAGAAGAAGG
TGGTCACCGTGCCGGCGATCAGCGACAAGGTCGCCGATATACCTTCGGACAATTATTCTTGGAGAAAATATGGTCAGAAA
CCAATCAAAGGCTCTCCTCATCCAAGGGGATACTACAGGTGCAGCAGCAAGAAGGATTGCCCGGCGAGGAAGCACGTCGA
GAGGTGTCGCAGCGACCCGGCGATGCTGCTCGTCACCTACGAGAACGAACACAACCACGCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis