Browse Element(s) Details


Os.30255.1.S1_at

Description gb:AK109070.1
DB_XREF= gi:32994279
TID=Os.30255.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative prenylated Rab receptor (OSJNBa0094F01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-G02, full insert sequence.
FL= gb:AK109070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5841010/11PRA1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58380Os.23341.1.S1_at11/113+33198209..33199182aldehyde oxidase, putative, expressed
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30255.1.S1_at--261--6691Chr03:33220874..33220898 (25 bp)
GTTCCGGATGAACGTGTACCTCGAC
LOC_Os03g58410
Os.30255.1.S1_at--260--1911Chr03:33220863..33220887 (25 bp)
ACGTGTACCTCGACGAGAGGGACGC
LOC_Os03g58410
Os.30255.1.S1_at--939--4611Chr03:33220840..33220864 (25 bp)
GCGTACGACGGATCGTCCTTCATGG
LOC_Os03g58410
Os.30255.1.S1_at--713--4851Chr03:33220800..33220824 (25 bp)
GCTACGCGCTCCCAAGATGAAGAAG
LOC_Os03g58410
Os.30255.1.S1_at--286--6171Chr03:33220722..33220746 (25 bp)
GAGGATTCTTGATGTGATTCTGATC
LOC_Os03g58410
Os.30255.1.S1_at--2--8691Chr03:33220710..33220734 (25 bp)
TGTGATTCTGATCTTGTGCTTGTGT
LOC_Os03g58410
Os.30255.1.S1_at--877--8791Chr03:33220688..33220712 (25 bp)
TGTTCTTGGATTTCTGTAGCTTGCA
LOC_Os03g58410
Os.30255.1.S1_at--525--3211Chr03:33220631..33220655 (25 bp)
CAAGGGAGTTTTACATTTGTTTGAT
LOC_Os03g58410
Os.30255.1.S1_at--757--6271Chr03:33220609..33220633 (25 bp)
GATGTAGTATGCTCATTTGGGTGAA
LOC_Os03g58410
Os.30255.1.S1_at--835--7691Chr03:33220591..33220615 (25 bp)
GGGTGAATTTTTTGGGCTGATTATG
LOC_Os03g58410
Os.30255.1.S1_at--1071--8851Chr03:33220568..33220592 (25 bp)
TGATGATTTCAAGTTGCTTTGGAGG
NONE
Target Sequence 
GTTCCGGATGAACGTGTACCTCGACGAGAGGGACGCGTACGACGGATCGTCCTTCATGGGGAGCTCCTATGGCGGCTACG
CGCTCCCAAGATGAAGAAGCATCAACACACTGAAATGAGATGAGACGAAGGTGTTTTTTTTTCTTCTTCTAAGAGGATTC
TTGATGTGATTCTGATCTTGTGCTTGTGTTCTTGGATTTCTGTAGCTTGCAATGTTGTGTATAGAATTTTCGTTTTCATT
TTTCAAGGGAGTTTTACATTTGTTTGATGTAGTATGCTCATTTGGGTGAATTTTTTGGGCTGATTATGATGATTTCAAGT
TGCTTTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis