Browse Element(s) Details


Os.10705.1.S1_at

Description gb:AK067840.1
DB_XREF= gi:32977858
TID=Os.10705.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) histone-like protein (OSJNBa0052F07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128M09, full insert sequence.
FL= gb:AK067840.1 gb:AK099211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5847011/11linker histone H1 and H5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58400Os.30977.1.S1_at11/113+33217856..33220100expressed protein
LOC_Os03g58410Os.30255.1.S1_at10/113+33220568..33221590PRA1 family protein, expressed
LOC_Os03g58420OsAffx.25753.1.S1_at11/113+33225890..33227417WRKY DNA binding domain containing protein, expressed
LOC_Os03g58430Os.12005.1.S1_at11/113+33229699..3323224340S ribosomal protein S15, putative, expressed
LOC_Os03g58450OsAffx.22653.1.S1_at11/113+33238955..33239993hypothetical protein
LOC_Os03g58470Os.10705.1.S1_at11/113+33243431..33244916linker histone H1 and H5 family protein, expressed
LOC_Os03g58480Os.9245.1.S1_at11/113+33249349..33253870Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10705.1.S1_at--726--4111Chr03:33244337..33244361 (25 bp)
CGAAGGCGGCGAAGACGTCAGCCAA
LOC_Os03g58470
Os.10705.1.S1_at--1086--9651Chr03:33244354..33244378 (25 bp)
TCAGCCAAGGACACGCCCAGCAAGA
LOC_Os03g58470
Os.10705.1.S1_at--839--5371Chr03:33244494..33244518 (25 bp)
GAAGAAGTAGAGCTCTCTCTCCGGC
LOC_Os03g58470
Os.10705.1.S1_at--701--4611Chr03:33244517..33244541 (25 bp)
GCGAGCGAGCAATCTAGGGCTTCAT
LOC_Os03g58470
Os.10705.1.S1_at--123--10071Chr03:33244531..33244555 (25 bp)
TAGGGCTTCATGGTTGTTTTCTTAG
LOC_Os03g58470
Os.10705.1.S1_at--89--3771Chr03:33244568..33244592 (25 bp)
CTCTTCTCTTTGTTGTTAGTTGCGA
LOC_Os03g58470
Os.10705.1.S1_at--731--10011Chr03:33244610..33244634 (25 bp)
TAGCTTGTAAATTTGATATCGCGGC
LOC_Os03g58470
Os.10705.1.S1_at--824--7031Chr03:33244639..33244663 (25 bp)
GTACACTGGTCATTTCGTACCCAGG
LOC_Os03g58470
Os.10705.1.S1_at--191--191Chr03:33244771..33244795 (25 bp)
ATTTGTCGAAATCACTTTAGCTAAG
LOC_Os03g58470
Os.10705.1.S1_at--1132--10471Chr03:33244816..33244840 (25 bp)
TTACTTACTGTATTGGCTTGACCAC
LOC_Os03g58470
Os.10705.1.S1_at--841--10231Chr03:33244826..33244850 (25 bp)
TATTGGCTTGACCACACCCTGTATT
LOC_Os03g58470
Target Sequence 
CGAAGGCGGCGAAGACGTCAGCCAAGGACACGCCCAGCAAGAAGGCGGCGCCGGCGGCCAAGAAGCCCGCCGCCGCGGCG
AAGAAGGCGCCCGCCAAGAAGGCCGCGCCGGCGAAGAAGGCGGCCGCTCCGGCGAGGAAGGTGCCCGCCCGGAAGGCGAA
GAAGTAGAGCTCTCTCTCCGGCGAGCGAGCAATCTAGGGCTTCATGGTTGTTTTCTTAGCTGTTTTTTTTTCTCTTCTCT
TTGTTGTTAGTTGCGAGGAGGGGTCAGGGGTACTAGCTTGTAAATTTGATATCGCGGCGGGGGTACACTGGTCATTTCGT
ACCCAGGTGGTGGTGNGCGACGATGATGACGACGACGACGAGACAGTTTGTTTTTAGGGCAATGTATTTCTGAGTAGATT
GGTGGAGTTTTTATTGTGGTAACAATCTTGTGATATTTGTCGAAATCACTTTAGCTAAGTAATTAATTATGNAGTAATTT
TACTTACTGTATTGGCTTGACCACACCCTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis