Browse Element(s) Details


OsAffx.25755.1.S1_at

Description tigr:9631.m05759
TID=OsAffx.25755.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5856011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58490Os.19503.1.S1_at11/113+33254765..33258653expressed protein
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25755.1.S1_at--776--10512Chr03:33283620..33283644 (25 bp)
TTCACCCGCCTTAGTGAACGACATG
LOC_Os03g58560
OsAffx.25755.1.S1_at--280--5452Chr03:33283605..33283629 (25 bp)
GAACGACATGGCCAGACAGCCGTTT
LOC_Os03g58560
OsAffx.25755.1.S1_at--555--1412Chr03:33283592..33283616 (25 bp)
AGACAGCCGTTTCTCTCACCTGTGC
LOC_Os03g58560
OsAffx.25755.1.S1_at--431--9672Chr03:33283577..33283601 (25 bp)
TCACCTGTGCATGCGGACGACGTAG
LOC_Os03g58560
OsAffx.25755.1.S1_at--555--3311Chr03:33283444..33283540 (25 bp)
CACATATTGCACAGAACTTCGAGGG
LOC_Os03g58560
OsAffx.25755.1.S1_at--803--6432Chr03:33283410..33283434 (25 bp)
GATCATGCATGATGAAGTTGCACAA
LOC_Os03g58560
OsAffx.25755.1.S1_at--718--1232Chr11:19275041..19275181 (25 bp)
AGTTGCACAACAGTGTGTTACACTT
NONE
OsAffx.25755.1.S1_at--679--7473Chr11:19275029..19275053 (25 bp)
GTGTGTTACACTTATGATCAGCTAT
NONE
OsAffx.25755.1.S1_at--512--2052Chr03:33283242..33283266 (25 bp)
ACTTATGATCAGCTATATGTTGTTT
LOC_Os03g58560
OsAffx.25755.1.S1_at--986--6851Chr03:33283221..33283245 (25 bp)
GTTTGAGAACGATTGGCCTCCAGAT
LOC_Os03g58560
OsAffx.25755.1.S1_at--687--6611Chr03:33283211..33283235 (25 bp)
GATTGGCCTCCAGATTTGACATTCA
LOC_Os03g58560
Target Sequence 
TTCACCCGCCTTAGTGAACGACATGGCCAGACAGCCGTTTCTCTCACCTGTGCATGCGGACGACGTAGTCGCCGGGGATT
GTGGAGCCGATGAGAAGCAGAAAACACATATTGCACAGAACTTCGAGGGGATGACTATGATCATGCATGATGAAGTTGCA
CAACAGTGTGTTACACTTATGATCAGCTATATGTTGTTTGAGAACGATTGGCCTCCAGATTTGACATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis