Browse Element(s) Details


Os.11778.1.S1_a_at

Description gb:AK064790.1
DB_XREF= gi:32974808
TID=Os.11778.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nodule-specific protein (OSJNBa0052F07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000C06, full insert sequence.
FL= gb:AK064790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5858011/11nodulin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11778.1.S1_a_at--983--9311Chr03:33300782..33300806 (25 bp)
TCCCTCGTGCTCGTCTGGAGGACAA
LOC_Os03g58580
Os.11778.1.S1_a_at--1016--5771Chr03:33300860..33300884 (25 bp)
GACGAAGCTACCACCAACGGTAACT
LOC_Os03g58580
Os.11778.1.S1_a_at--26--1691Chr03:33300872..33300896 (25 bp)
ACCAACGGTAACTCCGCCGATACAG
LOC_Os03g58580
Os.11778.1.S1_a_at--807--6451Chr03:33300890..33300914 (25 bp)
GATACAGCGGCGGAAAAAAGGTCAA
LOC_Os03g58580
Os.11778.1.S1_a_at--976--2891Chr03:33300907..33300931 (25 bp)
AAGGTCAACCTTAGTCAATGACGAG
LOC_Os03g58580
Os.11778.1.S1_a_at--978--6531Chr03:33300972..33300996 (25 bp)
GATTACTACACCAAAAGACAAGAGC
LOC_Os03g58580
Os.11778.1.S1_a_at--678--5611Chr03:33300988..33301012 (25 bp)
GACAAGAGCTTGTTACTTCTTATTA
LOC_Os03g58580
Os.11778.1.S1_a_at--112--5931Chr03:33300993..33301017 (25 bp)
GAGCTTGTTACTTCTTATTAGCAGA
LOC_Os03g58580
Os.11778.1.S1_a_at--277--7051Chr03:33301021..33301045 (25 bp)
GTCAAAAAATGGTAGGCTTGCTGCT
LOC_Os03g58580
Os.11778.1.S1_a_at--1022--7831Chr03:33301031..33301055 (25 bp)
GGTAGGCTTGCTGCTAATATAAGTT
LOC_Os03g58580
Os.11778.1.S1_a_at--100--4771Chr03:33301040..33301064 (25 bp)
GCTGCTAATATAAGTTTCCAGATAT
LOC_Os03g58580
Target Sequence 
TCCCTCGTGCTCGTCTGGAGGACAAGGAACTTCTACAAGGGGGACATCTACGCCAAGTTCCGCGAGAACACCGCCACCGA
CGAAGCTACCACCAACGGTAACTCCGCCGATACAGCGGCGGAAAAAAGGTCAACCTTAGTCAATGACGAGGACAGTAAAA
AGGGGTAGTAATGTAGTTTACTGATATAAAGATTACTACACCAAAAGACAAGAGCTTGTTACTTCTTATTAGCAGAAAAG
TCAAAAAATGGTAGGCTTGCTGCTAATATAAGTTTCCAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11778.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis