Browse Element(s) Details


Os.40026.1.S1_at

Description gb:D42427
DB_XREF= gi:3106703
DB_XREF=D42427
CLONE=AK153
TID=Os.40026.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative argonaute protein (OSJNBa0052F07.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5860011/11Argonaute-like protein At2g27880, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40026.1.S1_at--864--8171Chr03:33311864..33311888 (25 bp)
GGAACTGTCGTGGACCGTCAGATTT
LOC_Os03g58600
Os.40026.1.S1_at--234--171Chr03:33311647..33311671 (25 bp)
ATTTTACAGCCGATGCACTTCAGTC
LOC_Os03g58600
Os.40026.1.S1_at--183--4151Chr03:33310604..33310628 (25 bp)
CGCGCTCGCTACTACGTGGAAGGAG
LOC_Os03g58600
Os.40026.1.S1_at--316--1351Chr03:33310579..33310603 (25 bp)
AGAGTTCGGATGGTGGCTCGACCCC
LOC_Os03g58600
Os.40026.1.S1_at--346--8051Chr03:33310439..33310463 (25 bp)
GGAGAGCCCAATATTCTGGTAGTTT
LOC_Os03g58600
Os.40026.1.S1_at--46--5691Chr03:33310403..33310427 (25 bp)
GACTTGTTTGTGTCCTTGGTTTGGA
LOC_Os03g58600
Os.40026.1.S1_at--629--8071Chr03:33310381..33310405 (25 bp)
GGAGCTGGTTGCTTGTAGTTCCATT
LOC_Os03g58600
Os.40026.1.S1_at--629--10051Chr03:33310366..33310390 (25 bp)
TAGTTCCATTTGCTGTTTCCGAGTA
LOC_Os03g58600
Os.40026.1.S1_at--891--6951Chr03:33310344..33310368 (25 bp)
GTAGCCGGATTGTGACTGAGCTTTT
LOC_Os03g58600
Os.40026.1.S1_at--163--5911Chr03:33310327..33310351 (25 bp)
GAGCTTTTGTGGTCTTTAAGGCCTT
LOC_Os03g58600
Os.40026.1.S1_at--461--2951Chr03:33310310..33310334 (25 bp)
AAGGCCTTAACTCTGCTTGAGACAA
LOC_Os03g58600
Target Sequence 
GGAACTGTCGTGGACCGTCAGATTTGCCATCCTACAGAGTTCGATTTCTACCTGTGTAGCCATGCTGGCATACAGGGTAC
TAGCAGGCCAACTCATTACCATGTCCTTTACGATGAGAACCATTTTACAGCCGATGCACTTCAGTCCCTGACCAACAATC
TTTGCTATACCTATGCGCGATGCACCCGGGCAGTGTCTGTGGTCCCACCGGCCTACTATGNTCATCTTGCTGCATTCCGC
GCTCGCTACTACGTGGAAGGAGAGAGTTCGGATGGTGGCTCGACCCCTGGCAGCAGCGGGCAGGCTGTGGNGNGANAGGG
CCCTGTGNAGGTGCGCCAGCTTCCCAAGATCAAGGAGANCGTCAAGGACGTCATGTTCTACTGCTGAGNAGATTGTTGGC
AAGGAGAGCCCAATATTCTGGTAGTTTTTTGGTTGGTAGACTTGTTTGTGTCCTTGGTTTGGAGCTGGTTGCTTGTAGTT
CCATTTGCTGTTTCCGAGTAGCCGGATTGTGACTGAGCTTTTGTGGTCTTTAAGGCCTTAACTCTGCTTGAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis