Browse Element(s) Details


Os.10983.1.S1_at

Description gb:NM_185030.1
DB_XREF= gi:34897145
GEN=OSJNBa0052F07.6
TID=Os.10983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10983 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0052F07.6), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5865011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58690Os.18604.1.S1_at11/113+33360594..33361872expressed protein
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10983.1.S1_at--171--2771Chr03:33343407..33343431 (25 bp)
AAGACGAAGTTCCAGGACATCCCAC
LOC_Os03g58650
Os.10983.1.S1_at--623--10091Chr03:33343536..33343560 (25 bp)
TAGGACTTGCTTGCTTGACTCTCCA
LOC_Os03g58650
Os.10983.1.S1_at--532--5391Chr03:33343649..33343673 (25 bp)
GAAGCAGCAGCCAACGCGATGCAGA
LOC_Os03g58650
Os.10983.1.S1_at--1021--971Chr03:33343674..33343698 (25 bp)
AGGAGATCGCCTCAGAGCTTGCTAA
LOC_Os03g58650
Os.10983.1.S1_at--900--5031Chr03:33343715..33343739 (25 bp)
GCAGATTCAGTGGTTGCATTCCAGA
LOC_Os03g58650
Os.10983.1.S1_at--506--3011Chr03:33343740..33343764 (25 bp)
AATGCAAGGCTCGTCCTGATGTGTG
LOC_Os03g58650
Os.10983.1.S1_at--934--6871Chr03:33343771..33343795 (25 bp)
GTATTACTGCCTAACATTGCTGGAG
LOC_Os03g58650
Os.10983.1.S1_at--584--8411Chr03:33343795..33343819 (25 bp)
GGCCCTCATGAGGTCCAGAATCGAT
LOC_Os03g58650
Os.10983.1.S1_at--601--5711Chr03:33344134..33344158 (25 bp)
GACTCTGGATTATCACTCGAACTGA
LOC_Os03g58650
Os.10983.1.S1_at--108--1891Chr03:33344163..33344187 (25 bp)
ACGATGATCGTCACTCGGAGCAGAT
LOC_Os03g58650
Os.10983.1.S1_at--695--7771Chr03:33344201..33344225 (25 bp)
GGTGCCTTGGTGGTTGTCAAATCTC
LOC_Os03g58650
Target Sequence 
AAGACGAAGTTCCAGGACATCCCACCTATGAAAAAGTATGTTATGCTCCTAGGACTTGCTTGCTTGACTCTCCACCTTGC
TCTTCATTACAAGATGAAGAAGATGGAGACTAACCTCAAGCAGGATATGATCAAGTTTCGTGCTGAAGTAAAGCTGGAGA
TTGAAGCAGCAGCCAACGCGATGCAGAAGGAGATCGCCTCAGAGCTTGCTAAGTCTGCTCAATTTAGGGCAGATTCAGTG
GTTGCATTCCAGAAATGCAAGGCTCGTCCTGATGTGTGGTCGGAGTATTACTGCCTAACATTGCTGGAGGCCCTCATGAG
GTCCAGAATCGATGGCAAATAGACTCTGGATTATCACTCGAACTGAGAAAACGATGATCGTCACTCGGAGCAGATTGTCT
GGTCACTTGGTGCCTTGGTGGTTGTCAAATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis