Browse Element(s) Details


Os.12938.1.S1_at

Description gb:AK065406.1
DB_XREF= gi:32975424
TID=Os.12938.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0052F07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020B01, full insert sequence.
FL= gb:AK065406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5864011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58690Os.18604.1.S1_at11/113+33360594..33361872expressed protein
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12938.1.S1_at--886--6971Chr03:33334696..33334720 (25 bp)
GTACCAAGCTGCAAACGCATCATCT
LOC_Os03g58640
Os.12938.1.S1_at--465--4731Chr03:33333534..33333558 (25 bp)
GCTGTAACGCAATTCGTCACACGCA
LOC_Os03g58640
Os.12938.1.S1_at--228--2671Chr03:33333504..33333528 (25 bp)
AAGCCGGAGCACTAGATCCTAACTG
LOC_Os03g58640
Os.12938.1.S1_at--1147--3011Chr03:33333448..33333472 (25 bp)
AATGCCACATTGTCACTGGTAACTA
LOC_Os03g58640
Os.12938.1.S1_at--170--6491Chr03:33333349..33333373 (25 bp)
GATACCACCATGGAAGCTCATCTCG
LOC_Os03g58640
Os.12938.1.S1_at--1017--4131Chr03:33333326..33333350 (25 bp)
CGCTCCGTGTGCCTAGATTGTAAAT
LOC_Os03g58640
Os.12938.1.S1_at--607--10071Chr03:33333291..33333315 (25 bp)
TAGTGTCAAGTAGTCTCTCTTCTGC
LOC_Os03g58640
Os.12938.1.S1_at--117--9011Chr03:33333251..33333275 (25 bp)
TGAATCCTTCATGTCCAGTAGCTAA
LOC_Os03g58640
Os.12938.1.S1_at--91--6891Chr03:33333173..33333197 (25 bp)
GTATTTATTCATTCTTTCCTGTCAT
LOC_Os03g58640
Os.12938.1.S1_at--922--8731Chr03:33333149..33333173 (25 bp)
TGTAAATTGTAGATGGCTGCCGACC
LOC_Os03g58640
Os.12938.1.S1_at--816--7491Chr03:33333099..33333123 (25 bp)
GTGGTGGTTCTATCATCTATGCTAC
LOC_Os03g58640
Target Sequence 
GTACCAAGCTGCAAACGCATCATCTTAAGTTCAGATTCGTTAATTGAGATAAAGGATATGAGGTTCATTTTTCATGTAAA
CCAGGATGCTGTAACGCAATTCGTCACACGCACCCCGAAGCCGGAGCACTAGATCCTAACTGGTTTTGTTNAGCAACCCC
TTATGAGAAGCTCAATGCCACATTGTCACTGGTAACTAGTGGAGATCATTGAGTGAGCAGCGCTCACAGGGTGGGCTCGT
TGTGCTGCTCTACTCCTTTTCAAGTAGGATGTGATACCACCATGGAAGCTCATCTCGCTCCGTGTGCCTAGATTGTAAAT
GTGTAACATGTAGTGTCAAGTAGTCTCTCTTCTGCTCGGTTCATGAAGCATGAATCCTTCATGTCCAGTAGCTAAGCTAG
CACATTTGNTCTGCAGCCTCAGCCTGCAGCAACAAAAGCTTCTCCGNAGTATTTATTCATTCTTTCCTGTCATGTAAATT
GTAGATGGCTGCCGACCAGTGGGGTTGGAAATGTAAAAAAGTGTGGTGGTTCTATCATCTATGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis