Browse Element(s) Details


Os.5642.1.S1_at

Description gb:AK070229.1
DB_XREF= gi:32980253
TID=Os.5642.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0052F07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042L23, full insert sequence.
FL= gb:AK061104.1 gb:AK070229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5862010/11small multi-drug export protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5642.1.S1_at--764--10571NONE
TTCTCGGGAACATGGTGCCTGTGCC
NONE
Os.5642.1.S1_at--1077--2391Chr03:33327510..33327534 (25 bp)
AAACTTGCAGCATTTCTCTCTCAAA
LOC_Os03g58620
Os.5642.1.S1_at--517--2671Chr03:33327484..33327508 (25 bp)
AAGCGCATCTGCAACTCGGATTATG
LOC_Os03g58620
Os.5642.1.S1_at--566--831Chr03:33327462..33327486 (25 bp)
ATGGATCTTCTCTTTGAGCGGGCGC
LOC_Os03g58620
Os.5642.1.S1_at--664--10251Chr03:33327387..33327411 (25 bp)
TTTGTGGCTGTACCATTTCCTGGAA
LOC_Os03g58620
Os.5642.1.S1_at--370--3131Chr03:33327340..33327364 (25 bp)
AATTTCATCGGTTCTTGGCATGCCA
LOC_Os03g58620
Os.5642.1.S1_at--339--4431Chr03:33327319..33327343 (25 bp)
GCCATTCTGGTCAGGTTTTTCAGCA
LOC_Os03g58620
Os.5642.1.S1_at--743--3111Chr03:33327294..33327318 (25 bp)
AATTTCGTGGGCGTTGTCTTAGCAG
LOC_Os03g58620
Os.5642.1.S1_at--228--7651Chr03:33327180..33327204 (25 bp)
GGTGTCCTTCGATCCCTCAAAAAAT
LOC_Os03g58620
Os.5642.1.S1_at--707--3151Chr03:33327082..33327106 (25 bp)
AATTCTAGCTGTAAACTTCTCCCTC
LOC_Os03g58620
Os.5642.1.S1_at--105--9511Chr03:33327065..33327089 (25 bp)
TCTCCCTCTATTTTTCCTATTATAC
LOC_Os03g58620
Target Sequence 
TTCTCGGGAACATGGTGCCTGTGCCATTCATTATCCTCTACCTGAAAAAACTTGCAGCATTTCTCTCTCAAAGAAGCGCA
TCTGCAACTCGGATTATGGATCTTCTCTTTGAGCGGGCGCGGCAGAAGGCTGCACCTGTTGAGGAATTTCAATGGCTTGG
TTTGATGCTGTTTGTGGCTGTACCATTTCCTGGAACTGGAGCATGGACTGGGGCAATAATTTCATCGGTTCTTGGCATGC
CATTCTGGTCAGGTTTTTCAGCAAATTTCGTGGGCGTTGTCTTAGCAGGACTGTTGGTAAATTTGCTTATGAATCTTGGT
TTGAAGTATGCCATTATCACTGGTTTAGTTCTGTTCTTTTTATCAACTGTCATGTGGGGTGTCCTTCGATCCCTCAAAAA
ATCACTGAATGCTAAATGATGTAATGAACATGCAACTATTTTTTNCGTTGTAAAGAAGAATTCACCCTTGTGAGGGAATT
CTAGCTGTAAACTTCTCCCTCTATTTTTCCTATTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis