Browse Element(s) Details


Os.12826.1.S1_at

Description gb:AK062383.1
DB_XREF= gi:32972401
TID=Os.12826.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative thioredoxin (OSJNBa0052F07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B11, full insert sequence.
FL= gb:AK062383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5863011/11Thioredoxin H-type 5, putative, expressed
LOC_Os03g302701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0006499biological_processN-terminal protein myristoylation
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12826.1.S1_at--775--2611Chr03:33332165..33332292 (25 bp)
AACCCCAACAAGCTGATCGTGATCG
LOC_Os03g58630
Os.12826.1.S1_at--27--4511Chr03:33332063..33332087 (25 bp)
GCCGTCTTCTTCAAGATCGATGTCG
LOC_Os03g58630
Os.12826.1.S1_at--856--4411Chr03:33330679..33330703 (25 bp)
GCCATGCCGACCTTTGTGTTAATCA
LOC_Os03g58630
Os.12826.1.S1_at--433--7091Chr03:33330595..33330619 (25 bp)
GTCAACATGTTCATTTCATCCTCCT
LOC_Os03g58630
Os.12826.1.S1_at--694--3711Chr03:33330566..33330590 (25 bp)
CTAAATCCCAAACTTATGCCTGCAT
LOC_Os03g58630
Os.12826.1.S1_at--167--10151Chr03:33330552..33330576 (25 bp)
TATGCCTGCATTCCTCATTTAGTAC
LOC_Os03g58630
Os.12826.1.S1_at--652--9251Chr03:33330541..33330565 (25 bp)
TCCTCATTTAGTACCAGGCTCTGGT
LOC_Os03g58630
Os.12826.1.S1_at--111--4811Chr03:33330524..33330548 (25 bp)
GCTCTGGTTTCTCTCGGTGCTAGGA
LOC_Os03g58630
Os.12826.1.S1_at--1076--1112Chr03:17232481..17232517 (24 bp)
AGTGAGAGACCCTGTGGTTGTCCTC
LOC_Os03g30270
Os.12826.1.S1_at--639--7491Chr03:33330487..33330511 (25 bp)
GTGGTTGTCCTCTTAAAAATGCTGC
LOC_Os03g58630
Os.12826.1.S1_at--509--7071Chr03:33330394..33330418 (25 bp)
GTAATTGCCTGTTGCTCTTGAGTCA
LOC_Os03g58630
Target Sequence 
AACCCCAACAAGCTGATCGTGATCGACTTCTCCGCCACCTGGTGCGGGCCCTGCCGCTTCATCGAGCCGGCCTTCAAGGA
CATGGCCGGACGCTTCGCCGACGCCGTCTTCTTCAAGATCGATGTCGACGAACTTTCGGAAGTGGCGAGGCAATGGAAAG
TGGAGGCCATGCCGACCTTTGTGTTAATCAAGGGCGGGAAGGAGGTTAGTCGCGTGGTTGGTGCTAAGAAGGATGAACTG
GAGAGGAAAGTCAACATGTTCATTTCATCCTCCTCATCCTAAATCCCAAACTTATGCCTGCATTCCTCATTTAGTACCAG
GCTCTGGTTTCTCTCGGTGCTAGGAGTGAGAGACCCTGTGGTTGTCCTCTTAAAAATGCTGCAAAATTCGATGTGAAGTG
GGAGTAAACGCGTTTAAGACAATAAACTTGTGATACTTGGGAATGGAAATGTAATTGCCTGTTGCTCTTGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis