Browse Element(s) Details


Os.54750.1.S1_at

Description gb:AK106661.1
DB_XREF= gi:32991870
TID=Os.54750.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G12, full insert sequence.
FL= gb:AK106661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5817011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58180NANA3+33076510..33076953hypothetical protein
LOC_Os03g58190OsAffx.13538.1.S1_x_at11/113+33077557..33080431expressed protein
LOC_Os03g58190Os.56300.1.S1_at11/113+33077557..33080431expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010044biological_processresponse to aluminum ion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54750.1.S1_at--650--1811Chr03:33050982..33051006 (25 bp)
ACGCCCCAGGAATCGACGGCGGTGA
LOC_Os03g58170
Os.54750.1.S1_at--347--7531Chr03:33051144..33051168 (25 bp)
GTGGCGGCGTCTAGCCTCGCGCATT
LOC_Os03g58170
Os.54750.1.S1_at--528--5831Chr03:33051188..33051212 (25 bp)
GACCTCCTGGCCTTGCCGCGGATGG
LOC_Os03g58170
Os.54750.1.S1_at--753--7991Chr03:33051207..33051231 (25 bp)
GGATGGCAAGGCACCGGCGGTAGCG
LOC_Os03g58170
Os.54750.1.S1_at--116--4711Chr03:33051231..33051255 (25 bp)
GCGGCGGCAGCAGGTCGGTGACTCG
LOC_Os03g58170
Os.54750.1.S1_at--557--4051Chr03:33051416..33051440 (25 bp)
CGATCCTTGTTGCTCCTAGTCCTAG
LOC_Os03g58170
Os.54750.1.S1_at--429--10011Chr03:33051432..33051456 (25 bp)
TAGTCCTAGCCATCGGAGAACAACC
LOC_Os03g58170
Os.54750.1.S1_at--299--4211Chr03:33051457..33051481 (25 bp)
CCCCAAGTGGAGTAGTATTGCTCTT
LOC_Os03g58170
Os.54750.1.S1_at--692--10051Chr03:33051469..33051493 (25 bp)
TAGTATTGCTCTTGCTCTGCTCTAA
LOC_Os03g58170
Os.54750.1.S1_at--1133--9571Chr03:33051478..33051502 (25 bp)
TCTTGCTCTGCTCTAATTTCTAAAA
LOC_Os03g58170
Os.54750.1.S1_at--261--3691Chr03:33051497..33051521 (25 bp)
CTAAAATTCAGTGATGATTCGTGGT
LOC_Os03g58170
Target Sequence 
ACGCCCCAGGAATCGACGGCGGTGACGACCAGCTGGTTGATGCAGGGGGAGGCGTCGAAGTCGAACACCTCCAGCGACAG
CCTGGTCGCACGCCGGCGAGCCGCCAAGAGGGCCCTGACGGAGCCGGCCATGGCGCGCATGGCGCGGCGCTCGTACCGCC
CGGTGGCGGCGTCTAGCCTCGCGCATTCTCCTCGCGCGCGGTGACCGACCTCCTGGCCTTGCCGCGGATGGCAAGGCACC
GGCGGTAGCGCGGCGGCAGCAGGTCGGTGACTCGGAAATCGAGGGCGGGGAGCTCGCGCGGGACGGCCGCCCAGCGCCTT
GACAGCGCGGCGGTGGCGAGCGCGTCGCGGGTGTCGAGGCGGCGCAGGATGAGGTGGAGCAGGTCGTCCGGGAGAGCGCT
GAGGCGGTCCTCGCCGCAGGCTCGCCGTCGCCGCCGATCCTTGTTGCTCCTAGTCCTAGCCATCGGAGAACAACCCCCCA
AGTGGAGTAGTATTGCTCTTGCTCTGCTCTAATTTCTAAAATTCAGTGATGATTCGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis