Browse Element(s) Details


Os.9959.1.S1_at

Description gb:AK102207.1
DB_XREF= gi:32987416
TID=Os.9959.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.9959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087H03, full insert sequence.
FL= gb:AK102207.1 gb:AK120312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5815010/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9959.1.S1_at--1158--671NONE
ATGACATGTGCCTACACCAGCGGAA
NONE
Os.9959.1.S1_at--35--1551Chr03:33042570..33042594 (25 bp)
AGCATACACTTTCTGGGCTGCAAAG
LOC_Os03g58150
Os.9959.1.S1_at--776--9271Chr03:33042514..33042538 (25 bp)
TCCTGTTTTCTGCTGTGATGGTGCT
LOC_Os03g58150
Os.9959.1.S1_at--244--10651Chr03:33042337..33042361 (25 bp)
TTCCCATTGGGCAAGATCTCTGAAA
LOC_Os03g58150
Os.9959.1.S1_at--1020--231Chr03:33042310..33042334 (25 bp)
ATATATGGCGGACTGGCATCGCTCG
LOC_Os03g58150
Os.9959.1.S1_at--115--7151Chr03:33042286..33042310 (25 bp)
GTCTTCTCTGGATACATCATCTACG
LOC_Os03g58150
Os.9959.1.S1_at--135--6311Chr03:33042229..33042253 (25 bp)
GATGAGTATGTCTGGGCTGCTGTCT
LOC_Os03g58150
Os.9959.1.S1_at--964--5751Chr03:33042193..33042217 (25 bp)
GACGTGATCAACCTCTTCTTAGCTC
LOC_Os03g58150
Os.9959.1.S1_at--1006--10551Chr03:33042178..33042202 (25 bp)
TTCTTAGCTCTGCTGCGAGTGTTGA
LOC_Os03g58150
Os.9959.1.S1_at--1061--2571Chr03:33042106..33042130 (25 bp)
AACGAATGTCCGTGGATTCCTGTAC
LOC_Os03g58150
Os.9959.1.S1_at--286--3151Chr03:33042044..33042068 (25 bp)
AATTCTTGCTTAGTGGATCCTGGAG
LOC_Os03g58150
Target Sequence 
ATGACATGTGCCTACACCAGCGGAAAAGTCATTTTTGAGGCGGCAGCTCTCACAGCAGTGGTGGTGATCAGCTTGACAGC
ATACACTTTCTGGGCTGCAAAGAGAGNCCATGACTTCAATTTCCTCGGCCCCTTCCTGTTTTCTGCTGTGATGGTGCTGA
TTTTATTTTCACTGATCCAGATATTCTTCCCATTGGGCAAGATCTCTGAAATGATATATGGCGGACTGGCATCGCTCGTC
TTCTCTGGATACATCATCTACGACACGGACAATATCATCAAGCGCTACACTTACGATGAGTATGTCTGGGCTGCTGTCTC
GCTCTACCTCGACGTGATCAACCTCTTCTTAGCTCTGCTGCGAGTGTTGAGGGCAGCTGATAACTAGTTCATCAAGGCTA
GTCTCTACCCTGCACATAACGAATGTCCGTGGATTCCTGTACCCTGATTAAGCATCACGCTTTTGTTGATTCTGCTGTAA
ATTCTTGCTTAGTGGATCCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis